Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 2.0e-77 292.4 149 100.0
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 2.3e-60 235.7 119 99.2
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 1.2e-56 223.4 120 90.0
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.7e-56 221.1 118 91.5
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 5.7e-56 221.1 119 90.8
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.7e-55 219.5 118 89.8
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 7.0e-54 214.2 109 98.2
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 3.9e-52 208.4 109 93.6
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 1.5e-51 206.5 109 92.7
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 5.6e-51 204.5 109 89.9
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.7e-50 201.4 109 89.0
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.2e-49 198.0 109 88.1
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.2e-46 188.7 106 85.8
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 7.0e-46 187.6 108 82.4
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.2e-45 186.8 106 85.8
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.6e-45 186.4 106 84.9
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.0e-45 186.0 109 81.7
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 2.7e-45 185.7 111 81.1
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 3.5e-45 185.3 106 84.9
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 6.0e-45 184.5 110 80.9
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 6.0e-45 184.5 108 81.5
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 7.8e-45 184.1 110 82.7
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.0e-44 183.7 106 83.0
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 1.0e-44 183.7 106 84.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.3e-44 183.3 109 81.7
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.3e-44 183.3 109 81.7
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.3e-44 183.3 106 83.0
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 3.0e-44 182.2 106 82.1
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 3.0e-44 182.2 108 79.6
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 3.9e-44 181.8 106 84.9
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 5.0e-44 181.4 115 75.7
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 5.0e-44 181.4 106 83.0
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 6.6e-44 181.0 102 86.3
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 6.6e-44 181.0 108 81.5
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 8.6e-44 180.6 109 83.5
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.6e-44 180.6 106 79.2
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.6e-44 180.6 106 79.2
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 8.6e-44 180.6 104 82.7
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 8.6e-44 180.6 105 81.9
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 8.6e-44 180.6 105 84.8
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.5e-43 179.9 103 85.4
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.5e-43 179.9 107 80.4
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.5e-43 179.9 107 80.4
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.3e-43 178.7 103 84.5
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 4.3e-43 178.3 102 80.4
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 4.3e-43 178.3 107 79.4
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 4.3e-43 178.3 107 79.4
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 4.3e-43 178.3 106 82.1
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 4.3e-43 178.3 106 84.9
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 4.3e-43 178.3 145 63.4
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 5.6e-43 177.9 107 81.3
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 5.6e-43 177.9 103 82.5
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 5.6e-43 177.9 109 82.6
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 5.6e-43 177.9 106 83.0
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 7.3e-43 177.6 110 79.1
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.6e-42 176.4 116 75.9
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.6e-42 176.4 103 82.5
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 2.1e-42 176.0 116 75.9
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.1e-42 176.0 116 75.9
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 2.1e-42 176.0 106 82.1
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 3.6e-42 175.3 103 81.6
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 3.6e-42 175.3 109 78.9
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.6e-42 175.3 108 80.6
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.6e-42 175.3 106 84.0
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 4.7e-42 174.9 109 81.7
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 6.2e-42 174.5 108 77.8
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 6.2e-42 174.5 104 81.7
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 6.2e-42 174.5 109 74.3
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 6.2e-42 174.5 109 74.3
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 6.2e-42 174.5 106 79.2
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 8.1e-42 174.1 104 79.8
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 8.1e-42 174.1 107 77.6
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 8.1e-42 174.1 106 81.1
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 8.1e-42 174.1 104 80.8
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 1.1e-41 173.7 108 77.8
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.1e-41 173.7 106 80.2
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.4e-41 173.3 104 79.8
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.4e-41 173.3 106 80.2
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.8e-41 172.9 108 77.8
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.8e-41 172.9 106 79.2
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.3e-41 172.6 98 83.7
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 3.1e-41 172.2 107 75.7
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 4.0e-41 171.8 107 78.5
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.2e-41 171.4 106 80.2
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 5.2e-41 171.4 106 80.2
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 5.2e-41 171.4 100 82.0
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 6.8e-41 171.0 98 84.7
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 8.9e-41 170.6 105 81.9
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 8.9e-41 170.6 100 80.0
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 1.2e-40 170.2 103 79.6
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.5e-40 169.9 104 80.8
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.5e-40 169.9 103 79.6
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 2.0e-40 169.5 107 75.7
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 2.0e-40 169.5 105 81.0
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.6e-40 169.1 98 84.7
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.4e-40 168.7 105 78.1
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 7.5e-40 167.5 101 81.2
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.7e-39 166.4 109 75.2
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.9e-39 165.6 98 79.6
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.9e-39 165.6 98 80.6
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 4.9e-39 164.9 106 77.4
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.1e-38 163.7 106 78.3
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.1e-38 163.7 108 74.1
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.4e-38 163.3 98 81.6
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 5.4e-38 161.4 127 63.0
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 5.4e-38 161.4 98 82.7
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 9.2e-38 160.6 106 75.5
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.7e-37 159.1 95 81.1
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 8.6e-36 154.1 111 66.7
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.5e-35 153.3 98 77.6
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 7.3e-35 151.0 106 70.8
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 9.5e-35 150.6 104 76.9
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 3.6e-34 148.7 106 67.0
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 6.2e-34 147.9 106 69.8
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 6.2e-34 147.9 106 67.0
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 8.1e-34 147.5 111 65.8
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.8e-33 146.4 106 66.0
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.8e-33 146.4 106 68.9
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 5.2e-33 144.8 106 67.9
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 1.5e-32 143.3 106 67.0
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 1.5e-32 143.3 106 67.0
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 2.0e-32 142.9 106 67.0
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 2.0e-32 142.9 106 67.0
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.6e-32 142.5 106 66.0
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 2.6e-32 142.5 106 66.0
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 3.4e-32 142.1 106 66.0
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.6e-32 141.0 109 67.9
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.7e-31 139.8 87 80.5
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-31 138.7 107 66.4
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-31 138.7 107 66.4
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-31 138.7 107 66.4
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 3.8e-31 138.7 107 66.4
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 4.9e-31 138.3 104 70.2
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.1e-30 137.1 106 65.1
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.1e-30 137.1 97 68.0
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 5.4e-30 134.8 97 69.1
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.6e-29 133.3 94 74.5
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 6.0e-29 131.3 103 65.0
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.5e-27 126.7 66 90.9
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 3.3e-27 125.6 98 59.2
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 6.9e-25 117.9 79 70.9
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 6.9e-25 117.9 83 71.1
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 2.9e-23 112.5 77 75.3
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.9e-23 112.5 92 62.0
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 3.8e-23 112.1 90 65.6
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 4.9e-23 111.7 96 61.5
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-22 110.5 96 61.5
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 4.2e-22 108.6 85 63.5
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 1.3e-20 103.6 56 87.5
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.7e-20 103.2 88 59.1
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.1e-19 100.5 97 56.7
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 7.3e-19 97.8 90 58.9
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.1e-18 96.3 79 64.6
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 5.3e-17 91.7 56 75.0
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.2e-16 90.5 56 76.8
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 2.0e-16 89.7 58 74.1
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.3e-15 87.0 55 78.2
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 3.0e-12 75.9 87 47.1
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 7.4e-11 71.2 106 42.5
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 9.0e-09 64.3 46 71.7
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 4.2e-06 55.5 81 40.7


User provided reference genes

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