Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1419.1 698 100.0
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1368.2 698 95.6
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1368.2 698 95.6
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1366.7 698 95.4
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1359.4 698 94.6
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1350.1 696 94.3
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1347.8 694 94.5
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1244.2 695 85.8
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1233.4 696 85.1
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1227.2 695 84.2
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1223.4 696 84.5
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1217.2 695 84.0
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1213.7 697 84.4
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1211.4 695 83.3
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1208.0 695 83.5
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1203.7 695 83.0
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 695 83.0
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 691 83.1
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1199.1 696 83.0
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1195.6 697 82.8
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1189.9 696 82.2
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 695 81.6
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1189.1 696 82.0
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 695 81.3
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1185.6 695 80.7
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 697 80.8
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1184.1 694 80.7
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1181.4 695 81.2
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 692 80.8
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 696 81.9
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1176.8 691 81.8
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1176.0 695 81.9
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 695 81.4
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1171.0 696 80.2
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1170.2 698 78.8
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1169.8 692 80.5
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1165.6 694 80.1
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1165.2 691 81.3
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1165.2 700 79.6
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1162.5 747 76.7
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1161.4 698 78.9
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1161.4 718 79.1
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 695 79.9
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 695 79.7
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1157.5 695 79.7
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1155.2 696 79.7
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1155.2 720 78.6
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1153.7 696 79.3
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 694 79.3
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 700 79.1
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 696 79.0
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 695 79.3
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 694 79.3
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 694 79.0
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1145.2 695 78.7
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 695 79.0
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1144.0 695 78.8
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 695 80.0
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 695 78.6
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1141.7 694 78.1
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1140.9 695 78.0
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1140.9 674 81.2
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1140.6 694 77.4
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 695 79.1
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 695 79.0
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1137.9 698 77.2
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1137.9 694 78.1
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 694 78.7
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1137.1 695 79.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 694 77.7
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 696 77.9
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1133.2 695 77.0
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 694 77.7
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1129.8 695 78.3
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1129.8 696 79.0
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1129.0 694 78.5
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1125.2 693 78.4
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1124.4 719 75.9
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1118.6 694 75.9
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1114.8 696 75.9
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1113.6 694 75.1
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1113.6 691 78.7
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1113.2 696 75.7
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1111.7 647 81.5
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1107.8 741 73.8
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1104.0 694 76.2
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1102.4 687 75.1
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1101.3 698 77.2
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1097.8 694 75.1
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1087.4 695 77.3
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1082.0 713 72.2
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1078.2 679 77.5
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1075.5 696 76.4
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1075.1 679 77.2
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 4.3e-311 1070.8 695 76.5
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 2.1e-310 1068.5 612 83.8
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 6.2e-310 1067.0 675 75.0
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.6e-305 1052.4 701 72.9
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 3.0e-304 1048.1 695 75.1
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.8e-293 1012.3 705 69.9
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.1e-289 998.8 582 81.4
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 6.0e-289 997.3 689 69.7
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 1.9e-274 949.1 639 72.1
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.5e-260 902.9 709 66.4
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 4.2e-258 894.8 540 79.8
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.9e-255 885.9 581 73.0
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.4e-250 869.8 699 60.9
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.1e-237 827.0 539 75.0
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.8e-230 801.6 704 57.8
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.8e-230 801.6 704 57.8
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 7.0e-229 797.7 699 56.8
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 6.5e-227 791.2 704 57.2
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.2e-222 776.2 704 55.7
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.5e-218 763.5 711 56.1
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.2e-217 760.4 471 78.8
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.7e-188 662.9 384 81.5
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 3.5e-164 582.8 720 45.6
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 7.1e-157 558.5 375 73.1
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 5.7e-138 495.7 506 52.8
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.7e-111 407.1 763 36.3
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.2e-105 387.5 269 69.9
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 2.0e-103 380.9 248 73.0
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.7e-97 361.3 344 57.6
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 2.8e-97 360.5 820 32.0
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 2.9e-81 307.4 181 81.8
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 2.7e-79 300.8 246 65.0
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 4.0e-75 287.0 247 59.9
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 4.9e-73 280.0 166 78.9
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 3.5e-71 273.9 192 70.3
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 2.3e-62 244.6 235 54.9
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 2.5e-61 241.1 651 30.6
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 9.9e-50 202.6 125 74.4
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 2.7e-47 194.5 138 74.6
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 4.0e-43 180.6 145 67.6
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 3.3e-37 161.0 232 43.5
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.6e-36 158.7 93 80.6
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 5.5e-32 143.7 76 89.5
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 3.5e-31 141.0 75 88.0
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 7.4e-21 106.7 84 57.1
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 2.2e-20 105.1 85 58.8
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 7.9e-15 86.7 86 53.5
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 6.7e-14 83.6 50 80.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 5.7e-13 80.5 50 74.0
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 3.0e-06 58.2 33 81.8


User provided reference genes

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