Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 3.2e-86 323.6 236 100.0
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 4.8e-58 229.9 240 83.3
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 3.1e-49 200.7 176 73.9
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 3.8e-47 193.7 159 66.0
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 2.0e-27 128.3 151 51.7
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 3.7e-26 124.0 153 45.8
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 1.1e-25 122.5 170 43.5
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.4e-25 121.3 152 49.3
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 4.1e-25 120.6 154 48.1
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 2.7e-24 117.9 154 46.1
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 2.7e-24 117.9 154 46.1
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 1.0e-23 115.9 169 54.4
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.7e-23 115.2 168 39.9
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 2.3e-23 114.8 154 57.8
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 3.0e-23 114.4 168 48.8
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 3.9e-23 114.0 152 52.0
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 3.9e-23 114.0 120 52.5
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 6.6e-23 113.2 175 41.7
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.6e-23 113.2 173 45.1
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.1e-22 112.5 175 42.3
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.1e-22 112.5 175 42.3
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.1e-22 112.5 139 51.1
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 1.1e-22 112.5 153 44.4
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 1.9e-22 111.7 183 40.4
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.9e-22 111.7 173 52.0
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 2.5e-22 111.3 171 40.4
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 1.2e-21 109.0 152 42.8
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.8e-21 107.8 127 48.0
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-20 105.5 173 50.9
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-20 105.5 173 50.9
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 1.4e-20 105.5 119 47.1
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.4e-20 105.5 226 61.1
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 1.8e-20 105.1 173 50.9
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 3.1e-20 104.4 97 51.5
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.0e-20 104.0 173 50.3
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 1.2e-19 102.4 189 55.6
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 2.0e-19 101.7 164 37.8
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 2.6e-19 101.3 151 53.0
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 3.4e-19 100.9 162 38.3
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 4.4e-19 100.5 151 39.1
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 9.8e-19 99.4 147 43.5
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 1.3e-18 99.0 139 46.0
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 2.2e-18 98.2 103 47.6
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 3.7e-18 97.4 156 42.3
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 3.7e-18 97.4 161 35.4
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 8.3e-18 96.3 134 43.3
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 1.1e-17 95.9 174 40.2
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.1e-17 95.9 102 51.0
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 1.4e-17 95.5 172 37.2
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.4e-17 95.5 95 50.5
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 1.4e-17 95.5 121 61.2
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.9e-17 95.1 151 52.3
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.4e-17 94.7 99 46.5
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 5.4e-17 93.6 133 43.6
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 7.0e-17 93.2 133 43.6
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 1.2e-16 92.4 171 36.3
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 1.2e-16 92.4 97 46.4
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 1.6e-16 92.0 92 50.0
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 6.0e-16 90.1 97 44.3
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 1.0e-15 89.4 139 38.1
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 1.0e-15 89.4 139 38.1
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 1.0e-15 89.4 152 51.3
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.7e-15 88.6 134 36.6
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 3.9e-15 87.4 97 46.4
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 5.0e-15 87.0 157 51.6
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 5.0e-15 87.0 97 61.9
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 6.6e-15 86.7 137 37.2
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 6.6e-15 86.7 137 37.2
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 1.9e-14 85.1 88 52.3
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 3.3e-14 84.3 139 54.0
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 3.3e-14 84.3 81 54.3
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 7.3e-14 83.2 150 46.0
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 2.1e-13 81.6 120 44.2
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 4.7e-13 80.5 153 49.7
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.8e-12 78.6 150 38.0
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 2.3e-12 78.2 77 51.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 3.1e-12 77.8 133 48.9
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 4.0e-12 77.4 63 54.0
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 5.2e-12 77.0 190 34.2
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 8.9e-12 76.3 63 54.0
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 8.9e-12 76.3 63 54.0
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 2.9e-10 71.2 115 52.2
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 4.9e-10 70.5 139 29.5
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 4.9e-10 70.5 41 85.4
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 1.1e-09 69.3 74 73.0
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 1.4e-09 68.9 74 48.6
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 4.1e-09 67.4 65 55.4
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 9.2e-09 66.2 136 36.0
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 9.2e-09 66.2 116 38.8
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 1.2e-08 65.9 60 58.3
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 2.7e-08 64.7 136 35.3
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 3.5e-08 64.3 82 43.9
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 1.3e-07 62.4 141 30.5
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 5.6e-06 57.0 117 74.4
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 7.3e-06 56.6 117 74.4


User provided reference genes

Program Settings