Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 0.0e+00 1229.9 636 100.0
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 1.5e-254 882.9 695 68.8
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.8e-253 877.9 694 68.3
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.8e-247 859.4 694 67.7
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 2.3e-247 859.0 695 66.8
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.8e-239 832.8 693 64.8
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 5.2e-239 831.2 680 66.6
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.3e-237 826.6 680 66.2
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.7e-232 808.1 769 58.9
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.0e-218 763.8 690 59.9
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.2e-165 586.6 462 66.7
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.9e-141 506.5 707 44.3
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.9e-141 506.5 707 44.0
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 3.8e-141 506.1 698 45.1
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.3e-137 493.0 357 69.2
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.7e-136 489.6 721 43.6
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.8e-136 489.2 711 43.9
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 6.3e-136 488.8 718 43.6
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 8.2e-136 488.4 721 43.4
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 2.1e-131 473.8 727 41.0
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.8e-128 462.6 710 42.8
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 9.1e-127 458.4 711 41.4
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.2e-126 458.0 723 39.4
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 2.2e-125 453.8 702 42.3
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.8e-125 453.0 703 41.0
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.5e-124 451.1 694 41.9
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.5e-124 450.3 698 41.8
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 5.5e-124 449.1 703 41.3
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 8.8e-122 441.8 699 40.1
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.2e-118 431.4 708 40.7
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.0e-117 428.3 710 39.6
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 2.3e-117 427.2 720 39.7
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.5e-116 423.7 572 44.4
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.2e-115 421.4 699 39.6
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.6e-115 421.0 708 39.3
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 1.0e-114 418.3 699 39.1
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 8.9e-114 415.2 672 38.5
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 2.2e-112 410.6 726 38.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 3.7e-112 409.8 714 38.4
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 3.2e-111 406.8 728 37.2
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.2e-110 404.8 734 37.3
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 2.0e-110 404.1 734 37.3
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 2.3e-109 400.6 705 38.4
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 2.5e-108 397.1 711 38.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 9.5e-108 395.2 726 38.7
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.0e-106 391.7 582 41.6
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.8e-106 391.0 733 36.7
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.1e-106 390.2 714 37.7
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 5.2e-106 389.4 674 38.3
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 3.4e-105 386.7 682 38.6
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 5.8e-105 386.0 692 36.1
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.5e-105 385.6 726 37.2
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.7e-104 384.4 710 37.2
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.4e-103 381.3 710 37.6
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 4.1e-103 379.8 687 40.2
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 4.1e-103 379.8 705 37.0
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.6e-102 376.3 711 36.8
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.3e-101 374.0 647 39.3
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 6.6e-101 372.5 707 35.1
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 8.6e-101 372.1 712 36.7
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.1e-100 371.7 708 37.1
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.5e-100 371.3 724 36.9
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 7.3e-100 369.0 715 36.5
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 2.1e-99 367.5 711 36.0
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.8e-99 367.1 576 39.2
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.8e-98 362.5 603 39.1
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.0e-97 360.9 650 38.0
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.0e-97 360.9 725 35.7
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.6e-97 360.5 706 36.3
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 3.4e-97 360.1 699 36.2
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 6.4e-96 355.9 601 37.1
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.3e-96 355.5 719 35.0
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 3.2e-95 353.6 712 36.8
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.1e-90 338.6 549 40.6
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.6e-89 334.0 694 34.1
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 5.8e-89 332.8 652 34.8
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.3e-88 331.6 598 37.5
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.4e-87 327.4 588 38.3
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.1e-86 324.3 587 36.8
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.7e-86 323.9 723 34.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 4.6e-86 323.2 723 34.0
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.7e-85 321.2 202 76.7
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 8.6e-85 318.9 718 33.7
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 2.5e-84 317.4 729 33.9
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 3.3e-84 317.0 595 37.0
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 4.3e-84 316.6 602 36.5
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 5.6e-84 316.2 733 34.0
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 5.6e-84 316.2 577 35.2
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 4.7e-83 313.2 491 41.8
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 6.2e-83 312.8 719 33.7
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.4e-82 311.6 720 33.5
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.5e-81 308.1 621 35.9
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 2.6e-81 307.4 510 37.6
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.8e-80 303.5 677 33.8
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.1e-79 302.0 581 35.8
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.5e-78 297.0 586 35.3
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.0e-77 295.4 714 33.9
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 3.9e-77 293.5 500 37.4
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.5e-73 281.6 440 39.8
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.4e-71 274.2 651 32.4
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.2e-71 273.5 399 42.6
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.2e-71 273.5 575 33.7
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.9e-69 266.9 491 35.6
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.5e-68 264.2 564 34.4
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 6.4e-64 249.6 500 36.0
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.4e-63 248.4 647 30.6
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.6e-62 245.0 666 33.2
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 8.7e-61 239.2 613 31.5
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 1.1e-58 232.3 664 28.8
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.8e-58 231.5 541 33.1
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 5.3e-58 229.9 687 30.0
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 2.0e-57 228.0 654 30.7
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.3e-56 225.3 484 33.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.2e-56 224.6 648 30.4
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.3e-55 219.2 489 34.2
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 2.3e-53 214.5 488 34.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 3.4e-49 200.7 666 27.5
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.0e-48 199.1 401 35.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 3.6e-46 190.7 679 27.2
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 3.6e-46 190.7 679 27.2
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.8e-45 188.3 363 36.4
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.8e-45 188.3 352 34.9
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 9.7e-44 182.6 365 33.4
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 4.8e-35 153.7 321 35.8
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 6.9e-34 149.8 256 39.5
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 4.5e-33 147.1 243 39.1
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 7.7e-33 146.4 144 52.1
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.3e-32 145.6 211 38.4
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.3e-32 145.6 264 37.5
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.6e-30 138.7 236 39.8
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.1e-30 136.7 397 29.7
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 8.0e-30 136.3 216 39.4
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.7e-29 133.3 303 27.7
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.1e-28 132.5 247 36.0
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.7e-28 130.2 159 43.4
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 2.6e-25 121.3 249 38.6
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 7.2e-23 113.2 243 33.7
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 2.1e-22 111.7 280 34.6
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 2.1e-22 111.7 440 25.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.0e-21 109.4 159 40.9
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.4e-18 99.0 92 53.3
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 2.0e-17 95.1 344 28.2
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 7.7e-17 93.2 223 33.6
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 5.0e-16 90.5 107 47.7
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 6.5e-16 90.1 603 25.2
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.4e-15 86.3 225 30.2
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.0e-14 83.2 82 47.6
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.0e-13 82.8 85 48.2
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.4e-13 82.4 81 49.4
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.4e-13 82.4 324 26.9
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.8e-13 82.0 93 46.2
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 3.4e-12 77.8 133 40.6
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.2e-11 75.1 69 49.3
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.4e-10 72.4 101 38.6
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 2.7e-09 68.2 135 31.9
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.5e-09 67.8 62 50.0
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.0e-08 66.2 153 33.3
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.0e-08 63.9 75 46.7
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.5e-08 63.5 99 44.4
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 8.6e-08 63.2 112 33.0
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 5.5e-07 60.5 64 53.1
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 9.5e-07 59.7 99 41.4
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 2.1e-06 58.5 583 20.8


User provided reference genes

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