Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 1.6e-49 199.1 103 100.0
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 6.6e-43 177.2 103 90.3
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 2.3e-32 142.1 105 67.6
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 3.4e-31 138.3 105 68.6
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 1.3e-30 136.3 105 66.7
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 2.9e-30 135.2 105 64.8
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 4.9e-30 134.4 105 68.6
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 1.1e-29 133.3 103 67.0
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.4e-29 132.1 102 62.7
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 4.1e-29 131.3 104 62.5
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 3.5e-28 128.3 105 63.8
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 3.5e-28 128.3 105 63.8
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 4.6e-28 127.9 105 66.7
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 3.9e-27 124.8 105 63.8
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 6.6e-27 124.0 104 61.5
Lj4g0023984 Lotus japonicus HOM05D003234 ORTHO05D003635 8.6e-27 123.6 103 58.3
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.9e-26 122.5 105 62.9
Psat4g092120 Pisum sativum HOM05D003234 ORTHO05D003635 7.3e-26 120.6 103 60.2
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 2.1e-25 119.0 106 62.3
Atru.chr3.563 Acer truncatum HOM05D003234 ORTHO05D003635 3.6e-25 118.2 105 64.8
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 1.8e-24 115.9 102 62.7
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.4e-24 115.5 105 60.0
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.4e-24 115.5 105 60.0
Gohir.D12G065100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 4.0e-24 114.8 105 56.2
Gorai.008G068300 Gossypium raimondii HOM05D003234 ORTHO05D003635 4.0e-24 114.8 105 56.2
SGA_v2.0_scaffold276G46636 Striga asiatica HOM05D003234 ORTHO05D003635 4.0e-24 114.8 124 53.2
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 5.2e-24 114.4 103 58.3
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.4e-23 111.7 105 59.0
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 7.6e-23 110.5 105 59.0
Glyma.01G175400 Glycine max HOM05D003234 ORTHO05D003635 6.4e-22 107.5 103 55.3
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 6.4e-22 107.5 103 56.3
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.1e-21 106.7 103 58.3
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 1.1e-21 106.7 103 58.3
Glyma.11G067600 Glycine max HOM05D003234 ORTHO05D003635 1.6e-20 102.8 103 54.4
Peaxi162Scf00515g00521 Petunia axillaris HOM05D003234 ORTHO05D003635 2.7e-20 102.1 66 84.8
Phvul.002G029601 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 2.7e-20 102.1 103 53.4
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 8.7e-19 97.1 106 50.9
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 3.3e-18 95.1 106 50.9
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 1.3e-17 93.2 106 53.8
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 2.1e-17 92.4 102 51.0
Dinv26826 Davidia involucrata HOM05D003234 ORTHO05D003635 6.2e-17 90.9 53 83.0
Eucgr.I02454 Eucalyptus grandis HOM05D003234 ORTHO05D003635 8.1e-17 90.5 103 49.5
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 1.1e-16 90.1 107 50.5
Zm00001eb009770 Zea mays HOM05D003234 ORTHO05D003635 1.3e-14 83.2 107 47.7
Os03g0669600 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 2.2e-14 82.4 106 51.9
Migut.L00515 Erythranthe guttata HOM05D003234 ORTHO05D003635 1.4e-13 79.7 105 42.9
Gohir.A12G065000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.4e-13 79.0 105 44.8
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 4.6e-12 74.7 68 58.8
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 6.0e-12 74.3 107 44.9
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 6.0e-12 74.3 70 54.3
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 1.0e-11 73.6 108 46.3
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 1.3e-11 73.2 107 43.0
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 1.3e-11 73.2 107 43.0
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 1.3e-11 73.2 107 43.0
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 1.3e-11 73.2 107 43.9
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 1.3e-11 73.2 107 43.9
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 1.7e-11 72.8 107 43.9
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 1.7e-11 72.8 106 44.3
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.3e-11 72.4 107 43.9
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.3e-11 72.4 107 43.9
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.3e-11 72.4 107 43.9
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.3e-11 72.4 106 43.4
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 2.3e-11 72.4 109 43.1
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.3e-11 72.4 109 41.3
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 2.3e-11 72.4 107 43.0
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 3.0e-11 72.0 107 43.9
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 3.0e-11 72.0 109 44.0
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 3.0e-11 72.0 107 42.1
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 3.9e-11 71.6 107 43.9
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 3.9e-11 71.6 107 43.9
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.9e-11 71.6 109 43.1
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 3.9e-11 71.6 107 43.9
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 5.1e-11 71.2 106 41.5
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 5.1e-11 71.2 107 43.0
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 5.1e-11 71.2 107 43.0
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 6.6e-11 70.9 107 43.0
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 6.6e-11 70.9 108 42.6
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 6.6e-11 70.9 107 43.0
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 6.6e-11 70.9 107 43.0
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 8.7e-11 70.5 107 41.1
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 8.7e-11 70.5 107 45.8
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 8.7e-11 70.5 107 43.0
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 8.7e-11 70.5 107 43.0
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 8.7e-11 70.5 107 43.0
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 8.7e-11 70.5 107 43.0
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.1e-10 70.1 107 42.1
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 1.1e-10 70.1 107 43.9
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 1.1e-10 70.1 107 44.9
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 1.1e-10 70.1 107 42.1
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.1e-10 70.1 108 42.6
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.5e-10 69.7 107 43.0
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.5e-10 69.7 107 42.1
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 1.5e-10 69.7 107 41.1
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 1.5e-10 69.7 109 44.0
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 1.5e-10 69.7 107 43.9
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.9e-10 69.3 109 44.0
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.9e-10 69.3 107 41.1
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 1.9e-10 69.3 109 43.1
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 1.9e-10 69.3 109 40.4
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 1.9e-10 69.3 109 45.0
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 2.5e-10 68.9 107 43.9
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 2.5e-10 68.9 107 43.0
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 2.5e-10 68.9 109 43.1
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 2.5e-10 68.9 110 44.5
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 2.5e-10 68.9 107 43.9
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 2.5e-10 68.9 107 43.0
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 3.3e-10 68.6 107 43.0
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 3.3e-10 68.6 107 43.0
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.3e-10 68.6 108 44.4
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.3e-10 68.6 107 41.1
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 3.3e-10 68.6 108 42.6
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 4.3e-10 68.2 106 39.6
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 4.3e-10 68.2 107 43.0
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 4.3e-10 68.2 109 42.2
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 4.3e-10 68.2 106 38.7
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 4.3e-10 68.2 107 43.0
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 4.3e-10 68.2 109 42.2
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 5.6e-10 67.8 108 42.6
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 5.6e-10 67.8 107 41.1
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 5.6e-10 67.8 107 42.1
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 5.6e-10 67.8 107 42.1
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 9.6e-10 67.0 107 42.1
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 9.6e-10 67.0 107 42.1
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 9.6e-10 67.0 107 43.0
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 1.3e-09 66.6 106 40.6
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 40.2
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 40.2
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.6e-09 66.2 107 41.1
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 1.6e-09 66.2 108 41.7
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 1.6e-09 66.2 109 41.3
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 1.6e-09 66.2 107 41.1
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 2.1e-09 65.9 107 41.1
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 2.1e-09 65.9 109 40.4
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 2.1e-09 65.9 107 42.1
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 2.8e-09 65.5 107 43.0
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 2.8e-09 65.5 107 41.1
CDE02G3043 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 3.6e-09 65.1 53 66.0
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 41.1
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 6.2e-09 64.3 109 41.3
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 6.2e-09 64.3 107 41.1
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 8.1e-09 63.9 106 36.8
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 8.1e-09 63.9 109 42.2
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.1e-08 63.5 106 38.7
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 1.1e-08 63.5 111 39.6
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 1.1e-08 63.5 109 40.4
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 1.1e-08 63.5 109 40.4
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 36.4
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 36.4
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 1.1e-08 63.5 108 40.7
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 1.1e-08 63.5 108 40.7
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 1.1e-08 63.5 109 42.2
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 36.4
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 40.2
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 39.3
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 39.3
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 41.1
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 2.4e-08 62.4 109 41.3
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 3.1e-08 62.0 106 41.5
TAR628G0584 Trochodendron aralioides HOM05D003234 ORTHO05D003635 3.1e-08 62.0 88 38.6
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 4.0e-08 61.6 130 33.8
QL06p045796 Quercus lobata HOM05D003234 ORTHO05D003635 4.0e-08 61.6 36 77.8
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 41.1
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 6.9e-08 60.8 126 35.7
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 38.3
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 40.2
CDE09G0257 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.0e-07 59.3 106 34.9
AagrBONN_evm.TU.Sc2ySwM_344.3603 Anthoceros agrestis HOM05D003234 ORTHO05D003635 2.6e-07 58.9 95 42.1
PSO170G0681 Papaver somniferum HOM05D003234 ORTHO05D003635 7.6e-07 57.4 102 38.2
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 9.9e-07 57.0 110 36.4
ECA233G0660 Erigeron canadensis HOM05D003234 ORTHO05D003635 1.3e-06 56.6 94 37.2
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 1.3e-06 56.6 114 35.1
CSS0034652 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 2.9e-06 55.5 106 38.7
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 4.9e-06 54.7 106 35.8
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 4.9e-06 54.7 105 37.1
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 8.4e-06 53.9 87 36.8


User provided reference genes

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