Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 4.5e-86 321.2 163 100.0
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 2.7e-67 258.8 144 90.3
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.0e-66 256.9 144 89.6
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 1.0e-58 230.3 144 77.8
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.4e-58 229.9 158 77.2
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.8e-58 229.6 142 78.2
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 3.9e-58 228.4 142 76.8
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 1.1e-57 226.9 142 75.4
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.5e-57 226.5 142 76.8
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 2.0e-57 226.1 142 76.1
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 3.3e-57 225.3 142 73.9
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 3.3e-57 225.3 142 76.8
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 3.3e-57 225.3 142 77.5
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 5.7e-57 224.6 142 74.6
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 5.7e-57 224.6 141 75.9
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 5.7e-57 224.6 142 73.2
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 9.7e-57 223.8 144 75.0
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 1.7e-56 223.0 142 75.4
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.7e-56 223.0 144 74.3
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 3.7e-56 221.9 160 65.0
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 6.3e-56 221.1 142 73.2
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 1.1e-55 220.3 163 69.3
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 1.4e-55 219.9 142 73.2
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 1.4e-55 219.9 142 75.4
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 2.4e-55 219.2 142 72.5
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 3.1e-55 218.8 142 72.5
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 4.1e-55 218.4 142 73.2
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.3e-55 218.0 142 72.5
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 5.3e-55 218.0 142 71.1
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 7.0e-55 217.6 141 73.0
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 7.0e-55 217.6 142 73.2
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 2.0e-54 216.1 142 71.1
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 2.0e-54 216.1 163 66.9
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 4.5e-54 214.9 142 71.8
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 4.5e-54 214.9 142 73.2
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.9e-54 214.5 142 71.8
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 5.9e-54 214.5 142 71.1
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 7.7e-54 214.2 149 71.1
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.0e-53 213.8 143 72.7
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.3e-53 213.4 143 72.0
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 1.7e-53 213.0 157 65.6
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 2.9e-53 212.2 142 66.9
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 2.9e-53 212.2 142 66.9
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.9e-53 212.2 141 68.8
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 1.5e-52 209.9 141 73.0
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.9e-52 209.5 186 59.1
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 2.5e-52 209.1 142 71.1
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 3.2e-52 208.8 141 73.0
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 1.2e-51 206.8 142 69.0
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.6e-51 206.5 142 68.3
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 2.1e-51 206.1 142 69.7
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 2.7e-51 205.7 141 70.2
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 2.7e-51 205.7 142 69.0
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.0e-50 203.8 142 68.3
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 1.4e-50 203.4 142 66.9
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 1.4e-50 203.4 142 66.9
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 2.3e-50 202.6 142 68.3
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 3.0e-50 202.2 142 66.9
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 3.0e-50 202.2 141 68.8
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 5.2e-50 201.4 142 66.9
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 5.2e-50 201.4 142 67.6
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 8.8e-50 200.7 142 66.2
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 8.8e-50 200.7 142 69.0
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 1.1e-49 200.3 142 66.2
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 1.1e-49 200.3 142 66.2
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 2.6e-49 199.1 142 66.9
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 3.3e-49 198.7 142 66.9
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 3.3e-49 198.7 142 66.2
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 3.3e-49 198.7 142 66.9
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 4.4e-49 198.4 142 67.6
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 1.3e-48 196.8 142 66.9
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 1.3e-48 196.8 142 66.2
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.3e-48 196.8 195 54.4
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 1.7e-48 196.4 143 68.5
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 2.8e-48 195.7 143 68.5
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 2.8e-48 195.7 142 66.2
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 2.8e-48 195.7 142 66.2
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 6.3e-48 194.5 142 64.8
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 8.2e-48 194.1 142 66.2
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.1e-47 193.7 142 64.1
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 1.4e-47 193.4 142 66.2
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.8e-47 193.0 142 63.4
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 1.8e-47 193.0 142 64.1
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 2.4e-47 192.6 133 73.7
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 2.4e-47 192.6 141 64.5
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 5.9e-46 188.0 224 47.3
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 7.7e-46 187.6 141 62.4
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 3.8e-45 185.3 143 63.6
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 5.0e-45 184.9 142 64.1
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 8.5e-45 184.1 124 71.8
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 5.5e-44 181.4 147 59.9
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 2.7e-43 179.1 244 44.7
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 3.6e-43 178.7 141 63.1
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 8.0e-43 177.6 124 70.2
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.8e-42 176.4 122 71.3
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 8.8e-42 174.1 111 70.3
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.5e-41 173.3 137 64.2
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.0e-41 172.9 100 75.0
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 2.4e-39 166.0 176 53.4
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 7.0e-39 164.5 285 38.2
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 3.2e-36 155.6 144 52.8
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 2.1e-35 152.9 125 58.4
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.7e-32 143.3 102 65.7
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 2.2e-32 142.9 109 61.5
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.0e-30 136.3 142 48.6
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 1.3e-29 133.7 142 48.6
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 3.8e-29 132.1 143 50.3
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 6.6e-29 131.3 143 49.7
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.9e-28 129.8 119 58.0
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 3.6e-27 125.6 136 55.9
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.3e-26 122.9 71 81.7
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 1.3e-21 107.1 59 83.1
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 5.0e-21 105.1 72 70.8
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.5e-20 102.8 73 69.9
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 4.7e-19 98.6 142 41.5
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-18 97.1 90 47.8
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.2e-18 95.1 95 48.4
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 1.5e-17 93.6 89 49.4
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.0e-17 93.2 90 47.8
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 7.5e-17 91.3 148 35.1
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 1.7e-16 90.1 56 73.2
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 2.7e-14 82.8 194 32.0
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 1.0e-13 80.9 56 75.0
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 1.3e-13 80.5 46 76.1
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 3.9e-13 79.0 57 71.9
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.5e-12 76.3 86 45.3
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 3.3e-12 75.9 45 71.1
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 2.8e-11 72.8 48 64.6
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.8e-10 70.1 52 59.6
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 6.8e-10 68.2 150 34.0
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.3e-08 63.9 50 58.0
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 4.9e-08 62.0 141 31.2
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 7.8e-06 54.7 29 72.4


User provided reference genes

Program Settings