Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G355.4 Capsicum annuum HOM05D000832 ORTHO05D115434 1.7e-60 235.7 114 100.0
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 7.3e-19 97.4 60 80.0
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 7.3e-19 97.4 60 80.0
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 2.1e-18 95.9 60 78.3
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 1.4e-17 93.2 60 76.7
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 3.1e-17 92.0 60 75.0
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 5.3e-17 91.3 60 76.7
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 5.3e-17 91.3 60 76.7
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 5.3e-17 91.3 60 76.7
TAR622G0475 Trochodendron aralioides HOM05D000832 ORTHO05D000982 6.9e-17 90.9 60 71.7
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 6.9e-17 90.9 60 71.7
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 1.2e-16 90.1 60 73.3
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 1.2e-16 90.1 60 71.7
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 1.2e-16 90.1 60 73.3
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 1.5e-16 89.7 70 64.3
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 2.6e-16 89.0 70 64.3
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 2.6e-16 89.0 60 70.0
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 3.4e-16 88.6 60 71.7
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 3.4e-16 88.6 60 71.7
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 3.4e-16 88.6 60 71.7
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 4.5e-16 88.2 60 73.3
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 7.6e-16 87.4 45 86.7
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 7.6e-16 87.4 60 68.3
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 7.6e-16 87.4 60 68.3
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 7.6e-16 87.4 60 68.3
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 7.6e-16 87.4 60 70.0
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 9.9e-16 87.0 60 70.0
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 9.9e-16 87.0 60 70.0
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 1.3e-15 86.7 70 62.9
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 2.2e-15 85.9 64 65.6
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 2.2e-15 85.9 64 65.6
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 2.2e-15 85.9 64 65.6
Cpa.g.sc1.237 Carica papaya HOM05D000832 ORTHO05D000982 2.2e-15 85.9 60 70.0
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 2.2e-15 85.9 60 70.0
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 2.2e-15 85.9 64 65.6
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 2.2e-15 85.9 60 68.3
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 2.9e-15 85.5 60 71.7
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 3.8e-15 85.1 64 65.6
BcaC08g43157 Brassica carinata HOM05D000832 ORTHO05D000982 3.8e-15 85.1 64 65.6
BolC6t35571H Brassica oleracea HOM05D000832 ORTHO05D000982 3.8e-15 85.1 64 65.6
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 3.8e-15 85.1 42 88.1
MBI16_g06572_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 3.8e-15 85.1 60 73.3
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 4.9e-15 84.7 64 65.6
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 4.9e-15 84.7 64 65.6
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 6.4e-15 84.3 60 73.3
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 6.4e-15 84.3 60 68.3
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 6.4e-15 84.3 45 82.2
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 8.4e-15 84.0 45 82.2
C06p04400 Brassica napus HOM05D000832 ORTHO05D000982 1.1e-14 83.6 64 64.1
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 1.1e-14 83.6 64 64.1
BcaNung06368 Brassica carinata HOM05D000832 ORTHO05D000982 1.4e-14 83.2 64 64.1
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 1.4e-14 83.2 64 64.1
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 1.4e-14 83.2 64 64.1
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 2.4e-14 82.4 45 82.2
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 2.4e-14 82.4 56 75.0
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 2.4e-14 82.4 60 66.7
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 2.4e-14 82.4 60 66.7
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 4.2e-14 81.6 60 66.7
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 4.2e-14 81.6 60 65.0
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 5.4e-14 81.3 45 80.0
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 5.4e-14 81.3 60 65.0
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 5.4e-14 81.3 60 63.3
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 5.4e-14 81.3 60 66.7
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 7.1e-14 80.9 60 65.0
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 7.1e-14 80.9 43 76.7
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 7.1e-14 80.9 60 68.3
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 7.1e-14 80.9 60 68.3
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 7.1e-14 80.9 60 65.0
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 9.3e-14 80.5 60 65.0
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 1.2e-13 80.1 60 65.0
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 1.2e-13 80.1 60 66.7
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 2.1e-13 79.3 60 65.0
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 2.7e-13 79.0 60 63.3
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 3.5e-13 78.6 49 75.5
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 3.5e-13 78.6 60 65.0
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 3.5e-13 78.6 49 75.5
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 3.5e-13 78.6 60 65.0
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 4.6e-13 78.2 60 65.0
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 6.0e-13 77.8 56 69.6
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 6.0e-13 77.8 74 58.1
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 6.0e-13 77.8 45 77.8
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 7.9e-13 77.4 60 65.0
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 7.9e-13 77.4 60 65.0
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 7.9e-13 77.4 49 67.3
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 7.9e-13 77.4 74 55.4
ATR0598G239 Amborella trichopoda HOM05D000832 ORTHO05D000982 1.0e-12 77.0 43 81.4
Ca_05096_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 1.0e-12 77.0 60 65.0
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 1.0e-12 77.0 72 59.7
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.0e-12 77.0 62 62.9
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.0e-12 77.0 72 59.7
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 1.0e-12 77.0 72 59.7
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 1.0e-12 77.0 60 61.7
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 1.3e-12 76.6 60 63.3
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 1.3e-12 76.6 45 77.8
Psat0s1185g0040 Pisum sativum HOM05D000832 ORTHO05D000982 1.8e-12 76.3 60 63.3
Psat6g187920 Pisum sativum HOM05D000832 ORTHO05D000982 1.8e-12 76.3 60 63.3
unitig_27.g25234 Utricularia gibba HOM05D000832 ORTHO05D000982 1.8e-12 76.3 60 61.7
arahy.Tifrunner.gnm1.ann1.3YC2HT Arachis hypogaea HOM05D000832 ORTHO05D000982 2.3e-12 75.9 60 63.3
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 2.3e-12 75.9 74 56.8
Zm00001eb126420 Zea mays HOM05D000832 ORTHO05D000982 2.3e-12 75.9 60 66.7
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 3.0e-12 75.5 60 63.3
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 3.0e-12 75.5 74 56.8
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 5.1e-12 74.7 60 63.3
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 6.7e-12 74.3 60 60.0
VMungo0464G0422 Vigna mungo HOM05D000832 ORTHO05D020986 6.7e-12 74.3 49 71.4
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 6.7e-12 74.3 49 71.4
Os01g0110700 Oryza sativa ssp. japonica HOM05D000832 ORTHO05D000982 1.1e-11 73.6 60 61.7
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 1.1e-11 73.6 60 65.0
TPR.G9800 Trifolium pratense HOM05D000832 ORTHO05D000982 1.1e-11 73.6 60 61.7
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 1.5e-11 73.2 60 65.0
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 1.5e-11 73.2 56 69.6
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.9e-11 72.8 60 60.0
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 3.3e-11 72.0 56 67.9
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 4.3e-11 71.6 60 63.3
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 4.3e-11 71.6 60 63.3
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 4.3e-11 71.6 60 63.3
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 4.3e-11 71.6 60 61.7
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 5.6e-11 71.2 74 54.1
Medtr1g094010 Medicago truncatula HOM05D000832 ORTHO05D000982 5.6e-11 71.2 60 60.0
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 7.4e-11 70.9 42 76.2
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 7.4e-11 70.9 60 61.7
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 7.4e-11 70.9 60 58.3
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 9.6e-11 70.5 45 71.1
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 9.6e-11 70.5 60 61.7
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 1.3e-10 70.1 45 71.1
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 1.3e-10 70.1 60 63.3
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 1.3e-10 70.1 56 62.5
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 2.1e-10 69.3 42 78.6
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 3.6e-10 68.6 56 58.9
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 4.8e-10 68.2 45 68.9
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 8.1e-10 67.4 60 56.7
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 1.4e-09 66.6 60 55.0
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 1.8e-09 66.2 60 55.0
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 4.0e-09 65.1 45 62.2
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 4.0e-09 65.1 45 62.2
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 6.9e-09 64.3 43 60.5
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.2e-08 63.5 56 58.9
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 4.5e-08 61.6 45 64.4
CAN.G1107.5 Capsicum annuum HOM05D000001 ORTHO05D019568 2.2e-07 59.3 40 67.5
SMO146G0010 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 2.9e-07 58.9 43 58.1
CAN.G640.8 Capsicum annuum HOM05D000013 ORTHO05D115091 3.8e-07 58.5 31 77.4
CAN.G1341.2 Capsicum annuum HOM05D000001 ORTHO05D019568 8.4e-07 57.4 40 65.0
Mapoly0033s0016 Marchantia polymorpha HOM05D000832 ORTHO05D000982 1.4e-06 56.6 43 53.5
CAN.G8.42 Capsicum annuum HOM05D000222 ORTHO05D012343 3.2e-06 55.5 28 82.1
CAN.G847.15 Capsicum annuum HOM05D000204 ORTHO05D001668 5.5e-06 54.7 26 88.5
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 9.3e-06 53.9 76 42.1


User provided reference genes

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