Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 2.6e-52 208.4 102 100.0
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 8.2e-46 186.8 102 86.3
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 2.0e-44 182.2 102 85.3
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.7e-43 179.1 102 86.3
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 4.7e-41 171.0 92 90.2
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 1.7e-38 162.5 92 84.8
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.0e-35 153.3 102 78.4
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-35 152.5 102 78.4
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-35 152.5 102 78.4
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.7e-35 152.5 102 78.4
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.7e-35 152.5 102 78.4
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 5.0e-35 151.0 102 77.5
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 8.5e-35 150.2 102 74.5
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.1e-34 149.8 102 72.5
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 1.9e-34 149.1 96 76.0
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.9e-34 149.1 99 74.7
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 3.2e-34 148.3 99 75.8
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 3.2e-34 148.3 102 75.5
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 3.2e-34 148.3 102 75.5
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 3.2e-34 148.3 102 75.5
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 3.2e-34 148.3 102 75.5
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 4.2e-34 147.9 102 73.5
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.2e-34 147.9 102 70.6
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.2e-34 147.1 100 74.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.6e-33 146.0 102 75.5
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.6e-33 146.0 100 73.0
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 2.1e-33 145.6 102 71.6
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 3.6e-33 144.8 102 73.5
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 3.6e-33 144.8 102 74.5
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 8.0e-33 143.7 102 72.5
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.0e-33 143.7 96 75.0
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.8e-32 142.5 102 70.6
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 3.0e-32 141.7 99 67.7
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.8e-32 140.2 96 74.0
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 2.0e-31 139.0 105 68.6
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 2.6e-31 138.7 105 68.6
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.4e-31 138.3 101 68.3
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 3.4e-31 138.3 101 69.3
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 5.7e-31 137.5 103 68.0
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 9.8e-31 136.7 101 65.3
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.3e-30 136.3 101 67.3
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.3e-30 136.3 102 68.6
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.3e-30 136.3 96 69.8
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 2.2e-30 135.6 98 65.3
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 4.8e-30 134.4 94 74.5
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.8e-30 134.4 102 68.6
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 8.3e-30 133.7 98 67.3
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.1e-29 133.3 98 68.4
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.4e-29 132.9 101 67.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.8e-29 132.5 100 68.0
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 2.4e-29 132.1 102 71.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.1e-29 131.7 98 63.3
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 5.4e-29 131.0 98 66.3
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 5.4e-29 131.0 100 65.0
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 5.4e-29 131.0 97 66.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.2e-28 129.8 105 63.8
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.6e-28 129.4 102 63.7
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.6e-28 129.4 102 63.7
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.6e-28 129.4 102 63.7
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.6e-28 129.4 90 72.2
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.7e-28 128.6 97 67.0
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 2.7e-28 128.6 100 64.0
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.5e-28 127.9 97 63.9
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 4.5e-28 127.9 97 63.9
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.0e-27 126.7 98 62.2
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.0e-27 126.7 108 62.0
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.7e-27 125.9 98 65.3
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.7e-27 125.9 102 61.8
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.9e-27 125.2 102 64.7
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 3.8e-27 124.8 100 61.0
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 6.5e-27 124.0 96 62.5
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 6.5e-27 124.0 102 60.8
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-26 122.9 101 62.4
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.9e-26 122.5 100 62.0
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.5e-26 122.1 101 61.4
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.8e-25 118.6 102 58.8
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 4.7e-25 117.9 98 57.1
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 6.1e-25 117.5 105 57.1
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.0e-24 116.7 102 60.8
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.4e-24 116.3 101 59.4
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.0e-24 114.8 92 63.0
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 6.8e-24 114.0 96 57.3
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.2e-23 113.2 102 60.8
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.2e-23 113.2 102 60.8
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 9.8e-23 110.2 86 66.3
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.3e-22 109.8 92 60.9
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 4.9e-22 107.8 79 69.6
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 6.3e-22 107.5 85 58.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.1e-21 104.8 98 56.1
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.6e-20 102.8 97 56.7
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.6e-20 102.8 87 62.1
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 2.7e-20 102.1 91 59.3
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 2.7e-20 102.1 102 55.9
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.5e-20 101.3 87 60.9
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 2.3e-19 99.0 80 62.5
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 4.3e-18 94.7 91 57.1
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.0e-16 88.2 83 56.6
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 5.2e-16 87.8 85 56.5
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 6.8e-16 87.4 77 54.5
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.9e-16 87.0 80 55.0
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.9e-16 87.0 80 55.0
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-15 86.7 77 59.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.2e-15 86.7 99 51.5
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.5e-15 86.3 83 55.4
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 2.2e-14 82.4 87 52.9
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 8.3e-14 80.5 47 76.6
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 2.7e-12 75.5 75 52.0
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.5e-12 75.1 78 48.7
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 3.5e-12 75.1 86 48.8
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 7.8e-12 73.9 79 45.6
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 7.8e-12 73.9 89 50.6
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.3e-11 73.2 77 54.5
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.3e-11 72.4 81 45.7
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 2.3e-11 72.4 77 50.6
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 3.0e-11 72.0 80 51.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 3.0e-11 72.0 80 51.2
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 6.6e-11 70.9 70 51.4
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 8.6e-11 70.5 72 50.0
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 8.6e-11 70.5 78 50.0
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.9e-10 69.3 76 50.0
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.9e-10 69.3 76 50.0
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 3.3e-10 68.6 69 50.7
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 3.3e-10 68.6 85 43.5
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 4.3e-10 68.2 50 66.0
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 4.3e-10 68.2 69 49.3
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.6e-10 67.8 88 50.0
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 5.6e-10 67.8 77 48.1
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 7.3e-10 67.4 70 48.6
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 2.1e-09 65.9 62 54.8
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 2.8e-09 65.5 62 54.8
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 2.8e-09 65.5 71 49.3
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 3.6e-09 65.1 101 40.6
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 3.6e-09 65.1 97 43.3
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 3.6e-09 65.1 62 50.0
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.6e-09 65.1 62 53.2
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.2e-09 64.3 86 47.7
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.2e-09 64.3 86 47.7
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.2e-09 64.3 86 47.7
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 8.0e-09 63.9 62 48.4
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 8.0e-09 63.9 70 48.6
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 8.0e-09 63.9 62 53.2
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 8.0e-09 63.9 92 42.4
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.1e-08 63.5 70 47.1
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.4e-08 63.2 63 54.0
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.4e-08 63.2 67 49.3
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.8e-08 62.8 93 39.8
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 2.3e-08 62.4 75 48.0
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 2.3e-08 62.4 60 53.3
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 5.2e-08 61.2 67 47.8
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 5.2e-08 61.2 92 42.4
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 6.8e-08 60.8 75 45.3
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 8.9e-08 60.5 63 52.4
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 1.2e-07 60.1 69 47.8
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.5e-07 59.7 60 50.0
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.4e-07 58.2 80 42.5
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.8e-07 57.8 59 44.1
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.3e-06 56.6 85 42.4
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.2e-06 55.8 63 52.4
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.2e-06 55.8 63 52.4
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.2e-06 55.8 63 52.4
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.2e-06 55.8 98 37.8
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.2e-06 55.8 60 48.3
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.2e-06 55.8 59 42.4
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 2.9e-06 55.5 75 46.7
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.9e-06 55.5 62 45.2
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 4.9e-06 54.7 63 52.4


User provided reference genes

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