Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 1.2e-59 233.0 123 100.0
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 5.8e-54 214.2 123 91.9
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 3.0e-42 175.3 92 100.0
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 2.8e-40 168.7 92 97.8
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 4.9e-37 157.9 92 91.3
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 1.9e-36 156.0 92 90.2
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 1.9e-36 156.0 92 90.2
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 5.5e-36 154.5 92 87.0
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 5.5e-36 154.5 92 87.0
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 1.2e-35 153.3 92 85.9
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 2.1e-35 152.5 92 83.7
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.7e-35 152.1 91 85.7
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.7e-35 152.1 91 85.7
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 4.6e-35 151.4 91 85.7
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 6.0e-35 151.0 90 85.6
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 6.0e-35 151.0 91 84.6
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 7.9e-35 150.6 96 81.2
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 1.0e-34 150.2 92 83.7
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 1.3e-34 149.8 92 83.7
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.8e-34 149.4 91 83.5
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.8e-34 149.4 91 83.5
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 1.8e-34 149.4 92 83.7
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 1.8e-34 149.4 92 83.7
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 2.3e-34 149.1 92 82.6
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 2.3e-34 149.1 92 81.5
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.3e-34 149.1 91 83.5
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 2.3e-34 149.1 92 82.6
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 2.3e-34 149.1 92 83.7
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 3.0e-34 148.7 92 82.6
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 3.0e-34 148.7 92 83.7
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 3.0e-34 148.7 92 81.5
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 3.0e-34 148.7 95 80.0
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.9e-34 148.3 91 84.6
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 3.9e-34 148.3 92 82.6
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 5.1e-34 147.9 86 87.2
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 5.1e-34 147.9 92 81.5
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 6.7e-34 147.5 92 81.5
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 6.7e-34 147.5 92 81.5
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 6.7e-34 147.5 92 83.7
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 6.7e-34 147.5 92 81.5
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 8.7e-34 147.1 92 81.5
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 8.7e-34 147.1 91 83.5
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 8.7e-34 147.1 86 87.2
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 8.7e-34 147.1 92 81.5
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 1.1e-33 146.7 92 82.6
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 1.1e-33 146.7 91 83.5
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 1.1e-33 146.7 92 82.6
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.9e-33 146.0 92 80.4
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 1.9e-33 146.0 91 82.4
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.9e-33 146.0 91 82.4
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 1.9e-33 146.0 90 82.2
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 1.9e-33 146.0 94 79.8
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 2.5e-33 145.6 91 83.5
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 2.5e-33 145.6 86 87.2
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 3.3e-33 145.2 99 75.8
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 3.3e-33 145.2 92 81.5
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 4.3e-33 144.8 90 82.2
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 4.3e-33 144.8 90 82.2
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 4.3e-33 144.8 90 82.2
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 5.6e-33 144.4 90 81.1
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 5.6e-33 144.4 92 79.3
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 7.4e-33 144.1 90 82.2
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 7.4e-33 144.1 92 79.3
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 9.6e-33 143.7 86 83.7
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.3e-32 143.3 92 79.3
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 1.3e-32 143.3 92 79.3
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 1.3e-32 143.3 85 84.7
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 1.3e-32 143.3 90 80.0
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.3e-32 143.3 92 79.3
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 1.3e-32 143.3 88 83.0
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 1.3e-32 143.3 86 86.0
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 1.6e-32 142.9 88 80.7
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 1.6e-32 142.9 86 83.7
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 2.1e-32 142.5 92 79.3
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 2.8e-32 142.1 92 78.3
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 2.8e-32 142.1 88 80.7
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 3.7e-32 141.7 87 80.5
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 3.7e-32 141.7 92 80.4
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 3.7e-32 141.7 92 79.3
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 3.7e-32 141.7 100 76.0
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 3.7e-32 141.7 92 77.2
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 3.7e-32 141.7 90 81.1
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 8.2e-32 140.6 92 77.2
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 8.2e-32 140.6 92 77.2
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 8.2e-32 140.6 92 77.2
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 8.2e-32 140.6 92 77.2
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 8.2e-32 140.6 92 77.2
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 8.2e-32 140.6 92 77.2
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 8.2e-32 140.6 92 78.3
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.1e-31 140.2 92 77.2
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 1.1e-31 140.2 90 78.9
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 1.4e-31 139.8 87 79.3
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 1.4e-31 139.8 92 77.2
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 4.0e-31 138.3 91 75.8
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 4.0e-31 138.3 90 77.8
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 5.3e-31 137.9 91 75.8
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 6.9e-31 137.5 91 75.8
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 6.9e-31 137.5 91 75.8
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 2.0e-30 136.0 109 68.8
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.8e-30 134.4 91 79.1
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 1.7e-29 132.9 101 71.3
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.2e-29 132.5 91 78.0
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 3.8e-29 131.7 88 75.0
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 6.5e-29 131.0 92 75.0
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 6.5e-29 131.0 90 73.3
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 6.5e-29 131.0 90 73.3
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 8.4e-29 130.6 95 71.6
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.1e-28 130.2 103 69.9
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 1.4e-28 129.8 91 73.6
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 5.5e-28 127.9 102 67.6
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 9.3e-28 127.1 86 74.4
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 6.0e-27 124.4 74 85.1
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 1.3e-26 123.2 88 67.0
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 3.9e-26 121.7 91 70.3
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 6.7e-26 120.9 92 72.8
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 6.7e-26 120.9 92 72.8
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 1.1e-25 120.2 67 89.6
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.5e-25 119.8 72 86.1
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 1.5e-25 119.8 85 70.6
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 1.9e-25 119.4 69 85.5
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 2.5e-25 119.0 147 49.7
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 3.3e-25 118.6 66 89.4
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 5.7e-25 117.9 66 89.4
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 5.7e-25 117.9 68 85.3
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.6e-24 116.3 66 89.4
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 1.6e-24 116.3 66 86.4
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 2.8e-24 115.5 92 69.6
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 6.3e-24 114.4 65 86.2
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.1e-23 113.6 66 84.8
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 1.1e-23 113.6 65 86.2
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 2.4e-23 112.5 92 58.7
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 9.0e-23 110.5 91 65.9
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 1.4e-18 96.7 94 58.5
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.7e-16 89.7 50 90.0
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 1.1e-15 87.0 49 89.8
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 3.1e-15 85.5 92 56.5
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 6.9e-15 84.3 83 53.0
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 2.0e-14 82.8 48 87.5
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 3.8e-13 78.6 92 54.3
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 7.2e-12 74.3 43 86.0
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 7.2e-12 74.3 43 86.0
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 1.6e-11 73.2 42 85.7
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 2.1e-11 72.8 91 41.8
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 2.1e-11 72.8 42 83.3
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 2.3e-10 69.3 43 79.1
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 2.3e-10 69.3 43 79.1
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 6.7e-10 67.8 43 76.7
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 8.8e-10 67.4 54 64.8
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 1.1e-09 67.0 79 40.5
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 2.6e-09 65.9 45 73.3
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 3.3e-09 65.5 42 76.2
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 9.7e-09 63.9 45 71.1
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 2.0e-06 56.2 90 37.8


User provided reference genes

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