Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1715.3 881 100.0
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1577.4 873 93.4
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1547.7 923 88.3
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1456.8 871 87.8
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1288.5 871 80.7
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1249.2 852 74.6
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1239.2 868 73.2
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1229.2 869 72.0
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 0.0e+00 1224.9 780 82.7
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1223.8 877 70.9
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1208.7 872 71.9
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1202.2 872 71.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1190.3 878 69.5
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1185.2 870 70.3
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1182.9 870 69.2
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1172.9 871 69.1
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1168.7 869 68.5
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1165.6 870 68.9
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1161.7 874 68.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1159.8 870 68.9
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1154.8 870 68.7
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1154.4 870 67.8
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1153.7 945 65.3
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1148.7 870 67.8
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1140.6 870 67.1
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1140.2 870 67.7
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1140.2 870 67.5
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1139.0 867 68.1
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1135.2 872 67.5
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1129.4 864 67.8
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1125.5 870 67.1
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1114.8 871 66.8
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1113.2 870 66.6
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1112.4 881 67.1
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1109.4 884 65.6
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1107.8 867 66.2
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1102.8 871 66.1
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1101.3 879 65.9
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1100.5 870 66.0
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1095.9 947 61.5
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1095.5 886 65.2
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1095.5 871 66.0
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1094.3 884 65.4
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1093.2 873 65.1
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1091.3 910 62.6
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1090.9 814 69.3
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1089.7 871 66.1
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1088.6 873 64.4
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1087.4 873 65.8
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1086.2 873 65.8
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1083.2 881 64.6
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 6.0e-312 1074.7 1027 58.6
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 6.0e-312 1074.3 855 65.5
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 4.2e-311 1071.2 871 64.9
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 9.0e-311 1070.1 870 64.7
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 7.8e-310 1067.0 881 64.1
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.7e-304 1049.3 1057 56.1
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 1.4e-303 1046.2 890 62.0
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.9e-303 1045.8 1034 56.0
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 3.2e-303 1045.0 872 62.5
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 6.6e-301 1037.3 868 62.1
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 3.4e-297 1025.0 867 60.9
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 2.9e-296 1021.9 875 60.2
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 4.9e-296 1021.1 875 60.3
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 3.2e-295 1018.5 867 60.2
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 1.6e-294 1016.1 869 60.2
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 2.1e-294 1015.8 871 60.7
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 4.6e-294 1014.6 870 60.9
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 1.7e-293 1012.7 875 60.0
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 2.3e-293 1012.3 877 59.9
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 3.9e-293 1011.5 877 62.1
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 3.3e-292 1008.4 869 60.0
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 5.6e-292 1007.7 859 63.8
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 5.2e-290 1001.1 871 59.8
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 1.9e-284 982.6 720 70.4
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 2.6e-281 972.2 867 58.8
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.3e-280 969.9 760 65.8
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 3.5e-278 961.8 867 57.0
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 3.9e-277 958.4 828 60.5
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.1e-275 952.6 895 55.6
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.8e-275 952.2 878 60.3
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.8e-275 952.2 727 67.4
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 2.4e-274 949.1 963 54.8
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 3.1e-274 948.7 867 57.4
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.7e-270 935.6 665 73.8
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 3.3e-268 928.7 867 56.7
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.3e-267 926.8 911 56.2
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 2.5e-263 912.5 872 54.9
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 7.9e-262 907.5 889 54.1
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 7.7e-249 864.4 884 54.2
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 4.1e-242 842.0 681 65.3
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 5.5e-239 831.6 881 52.0
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 6.1e-238 828.2 642 65.7
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 7.9e-238 827.8 590 72.5
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 3.6e-222 775.8 600 67.0
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 1.1e-191 674.5 570 61.2
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.3e-184 650.2 480 71.2
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 3.4e-180 636.3 520 62.7
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 2.6e-164 583.6 487 63.7
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 5.8e-156 555.8 894 39.6
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.8e-152 544.3 378 72.2
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.7e-152 542.3 506 58.1
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 1.2e-148 531.6 410 65.1
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.6e-142 511.1 901 38.3
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 2.8e-134 483.8 390 62.8
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.8e-133 481.1 865 37.1
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 7.7e-132 475.7 859 37.3
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 6.5e-131 472.6 563 49.0
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.2e-129 468.4 419 61.6
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.3e-128 464.2 633 45.0
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.5e-124 451.4 903 35.4
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 7.0e-117 426.0 230 98.7
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.4e-103 380.6 685 38.1
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 1.6e-97 361.7 250 74.8
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 3.1e-93 347.4 349 55.3
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 9.2e-93 345.9 534 40.6
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.0e-76 291.6 473 42.9
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.1e-73 281.6 230 62.6
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 6.8e-72 276.6 191 74.3
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 6.8e-64 250.0 223 63.2
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.0e-59 236.1 151 74.2
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 4.3e-50 204.1 259 47.1
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.4e-48 199.1 174 60.3
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 9.3e-37 159.8 86 96.5
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 2.6e-31 141.7 103 68.9
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 3.8e-30 137.9 115 58.3
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 3.2e-29 134.8 221 36.2
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 9.6e-26 123.2 125 48.0
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.7e-25 121.3 120 54.2
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.4e-24 119.4 81 65.4
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 3.1e-24 118.2 161 47.2
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.0e-23 115.5 145 49.7
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 2.5e-21 108.6 133 47.4
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 1.0e-19 103.2 65 75.4
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 1.8e-19 102.4 195 36.4
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 2.3e-19 102.1 93 63.4
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 7.4e-18 97.1 95 60.0
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 2.2e-17 95.5 84 63.1
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 5.9e-15 87.4 59 67.8
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.9e-13 82.4 52 71.2
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 9.4e-13 80.1 782 20.6
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 4.6e-12 77.8 143 42.0
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.0e-11 76.6 73 61.6
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 3.9e-11 74.7 143 39.9
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 7.4e-10 70.5 993 19.1
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 6.3e-09 67.4 69 43.5
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.4e-08 65.5 81 40.7
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 4.1e-08 64.7 112 33.9
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 1.5e-07 62.8 238 26.9
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 1.0e-06 60.1 86 41.9


User provided reference genes

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