Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G346.10 Capsicum annuum HOM05D003946 ORTHO05D013825 1.9e-109 399.4 237 100.0
CAN.G346.9 Capsicum annuum HOM05D013030 ORTHO05D013825 9.2e-24 114.8 127 68.5
CAN.G651.10 Capsicum annuum HOM05D000307 ORTHO05D000166 3.1e-19 99.8 146 52.7
CAN.G651.8 Capsicum annuum HOM05D000307 ORTHO05D000166 3.1e-19 99.8 146 52.7
CAN.G651.9 Capsicum annuum HOM05D000307 ORTHO05D000166 3.1e-19 99.8 146 52.7
CAN.G14.20 Capsicum annuum HOM05D001503 ORTHO05D013825 9.9e-18 94.7 71 70.4
CAN.G226.6 Capsicum annuum HOM05D000307 ORTHO05D000166 2.2e-17 93.6 146 50.0
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 1.4e-16 90.9 87 54.0
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 1.4e-16 90.9 87 54.0
AL7G21660 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 3.2e-16 89.7 87 56.3
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 4.2e-16 89.4 87 52.9
Aa31LG2G20050 Aethionema arabicum HOM05D003946 ORTHO05D004485 5.4e-16 89.0 87 54.0
CARHR238370 Cardamine hirsuta HOM05D003946 ORTHO05D004485 5.4e-16 89.0 87 55.2
TAR625G1091 Trochodendron aralioides HOM05D003946 ORTHO05D004485 5.4e-16 89.0 86 53.5
Carub.0007s1011 Capsella rubella HOM05D003946 ORTHO05D004485 7.1e-16 88.6 87 55.2
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 9.3e-16 88.2 87 52.9
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 9.3e-16 88.2 87 52.9
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 9.3e-16 88.2 87 52.9
PSO210G1136 Papaver somniferum HOM05D003946 ORTHO05D004485 9.3e-16 88.2 84 57.1
Peaxi162Scf00038g00224 Petunia axillaris HOM05D003946 ORTHO05D004485 9.3e-16 88.2 83 55.4
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 1.2e-15 87.8 87 51.7
Gohir.D04G087100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 1.6e-15 87.4 88 53.4
Gorai.012G097100 Gossypium raimondii HOM05D003946 ORTHO05D004485 1.6e-15 87.4 88 53.4
PSO782G1270 Papaver somniferum HOM05D003946 ORTHO05D004485 1.6e-15 87.4 86 54.7
PSO832G3676 Papaver somniferum HOM05D003946 ORTHO05D004485 2.1e-15 87.0 84 56.0
PSO063G3610 Papaver somniferum HOM05D003946 ORTHO05D004485 3.5e-15 86.3 84 54.8
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 3.5e-15 86.3 87 50.6
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 4.6e-15 85.9 87 51.7
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 6.0e-15 85.5 87 51.7
CAN.G1190.24 Capsicum annuum HOM05D003946 ORTHO05D004485 1.0e-14 84.7 86 55.8
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 1.0e-14 84.7 87 50.6
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 1.0e-14 84.7 87 50.6
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 1.3e-14 84.3 86 50.0
Gohir.D05G008000 Gossypium hirsutum HOM05D003946 ORTHO05D004485 1.3e-14 84.3 87 49.4
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 1.7e-14 84.0 87 50.6
TAR636G0475 Trochodendron aralioides HOM05D003946 ORTHO05D004485 1.7e-14 84.0 86 52.3
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 2.3e-14 83.6 85 50.6
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 3.0e-14 83.2 87 51.7
Glyma.18G174600 Glycine max HOM05D003946 ORTHO05D004485 3.0e-14 83.2 87 50.6
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 3.0e-14 83.2 87 49.4
Solyc07g006180.3 Solanum lycopersicum HOM05D003946 ORTHO05D004485 3.0e-14 83.2 86 54.7
Sopen07g002290 Solanum pennellii HOM05D003946 ORTHO05D004485 6.6e-14 82.0 86 53.5
CSS0017975 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 8.7e-14 81.6 86 51.2
CSS0020287 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 8.7e-14 81.6 86 51.2
Gohir.A05G007100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 8.7e-14 81.6 87 48.3
CAN.G363.9 Capsicum annuum HOM05D003946 ORTHO05D004485 1.1e-13 81.3 86 54.7
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 1.1e-13 81.3 86 50.0
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 1.5e-13 80.9 86 48.8
Gorai.009G008100 Gossypium raimondii HOM05D003946 ORTHO05D004485 1.5e-13 80.9 84 48.8
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 1.5e-13 80.9 87 50.6
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 1.9e-13 80.5 108 41.7
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 1.9e-13 80.5 108 41.7
arahy.Tifrunner.gnm1.ann1.TB3RSS Arachis hypogaea HOM05D003946 ORTHO05D004485 1.9e-13 80.5 83 47.0
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 2.5e-13 80.1 87 48.3
SGA_v2.0_scaffold293G47418 Striga asiatica HOM05D003946 ORTHO05D004485 2.5e-13 80.1 86 52.3
Gohir.A05G345884 Gossypium hirsutum HOM05D003946 ORTHO05D004485 3.3e-13 79.7 87 50.6
Eucgr.C00110 Eucalyptus grandis HOM05D003946 ORTHO05D004485 5.6e-13 79.0 87 47.1
HPP92_017289 Vanilla planifolia HOM05D003946 ORTHO05D004485 5.6e-13 79.0 85 47.1
MELO3C004108.2 Cucumis melo HOM05D003946 ORTHO05D004485 7.3e-13 78.6 87 46.0
PGSC0003DMG400011219 Solanum tuberosum HOM05D003946 ORTHO05D004485 9.6e-13 78.2 86 53.5
CsaV3_2G007790 Cucumis sativus L. HOM05D003946 ORTHO05D004485 1.6e-12 77.4 87 46.0
Migut.K00288 Erythranthe guttata HOM05D003946 ORTHO05D004485 1.6e-12 77.4 86 51.2
Oeu024902.1 Olea europaea HOM05D003946 ORTHO05D004485 1.6e-12 77.4 84 50.0
Sed0010600 Sechium edule HOM05D003946 ORTHO05D004485 1.6e-12 77.4 87 47.1
arahy.Tifrunner.gnm1.ann1.H72Z00 Arachis hypogaea HOM05D003946 ORTHO05D005257 2.8e-12 76.6 86 46.5
ClCG11G012680 Citrullus lanatus HOM05D003946 ORTHO05D004485 2.8e-12 76.6 88 45.5
DCAR_014726 Daucus carota HOM05D003946 ORTHO05D004485 2.8e-12 76.6 87 48.3
Nitab4.5_0002545g0010 Nicotiana tabacum HOM05D003946 ORTHO05D004485 2.8e-12 76.6 86 52.3
Peaxi162Scf00038g00222 Petunia axillaris HOM05D003946 ORTHO05D004485 2.8e-12 76.6 86 52.3
Nitab4.5_0003269g0040 Nicotiana tabacum HOM05D003946 ORTHO05D004485 8.1e-12 75.1 86 51.2
SalBow6G3589 Salvia bowleyana HOM05D003946 ORTHO05D004485 2.4e-11 73.6 85 48.2
unitig_62.g23482 Utricularia gibba HOM05D003946 ORTHO05D004485 2.4e-11 73.6 86 47.7
Ciclev10010190m.g Citrus clementina HOM05D003946 ORTHO05D004485 3.1e-11 73.2 113 39.8
Sc18g0003220 Simmondsia chinensis HOM05D003946 ORTHO05D004485 3.1e-11 73.2 87 47.1
Cc06_g14380 Coffea canephora HOM05D003946 ORTHO05D004485 4.0e-11 72.8 86 50.0
SEGI_31472 Sequoiadendron giganteum HOM05D003946 ORTHO05D004485 9.0e-11 71.6 83 44.6
Haze_21259 Corylus avellana HOM05D003946 ORTHO05D004485 1.2e-10 71.2 87 47.1
Duzib150G0638 Durio zibethinus HOM05D003946 ORTHO05D004485 2.0e-10 70.5 87 48.3
EL10Ac8g18885 Beta vulgaris HOM05D003946 ORTHO05D004485 2.6e-10 70.1 87 44.8
Cfa012892 Carpinus fangiana HOM05D003946 ORTHO05D004485 2.6e-10 70.1 87 46.0
CiPaw.10G166500 Carya illinoinensis HOM05D003946 ORTHO05D004485 2.6e-10 70.1 87 46.0
C07p57950 Brassica napus HOM05D003946 ORTHO05D004485 5.8e-10 68.9 90 48.9
BolC7t46253H Brassica oleracea HOM05D003946 ORTHO05D004485 5.8e-10 68.9 90 48.9
Manes.14G148900 Manihot esculenta HOM05D003946 ORTHO05D004485 5.8e-10 68.9 93 41.9
arahy.Tifrunner.gnm1.ann1.9J99EW Arachis hypogaea HOM05D003946 ORTHO05D004485 7.6e-10 68.6 81 44.4
AUR62028392 Chenopodium quinoa HOM05D003946 ORTHO05D004485 7.6e-10 68.6 87 43.7
Hma1.2p1_2732F.1_g327665 Hydrangea macrophylla HOM05D003946 ORTHO05D004485 7.6e-10 68.6 87 44.8
QL02p094618 Quercus lobata HOM05D003946 ORTHO05D004485 7.6e-10 68.6 86 46.5
Ciclev10009155m.g Citrus clementina HOM05D003946 ORTHO05D004485 9.9e-10 68.2 87 44.8
Zm00001eb365370 Zea mays HOM05D003946 ORTHO05D004485 9.9e-10 68.2 87 46.0
Cpa.g.sc37.157 Carica papaya HOM05D003946 ORTHO05D004485 1.3e-09 67.8 87 46.0
Duzib187G0180 Durio zibethinus HOM05D003946 ORTHO05D004485 1.3e-09 67.8 87 44.8
Duzib187G0394 Durio zibethinus HOM05D003946 ORTHO05D004485 1.3e-09 67.8 87 44.8
Zm00001eb060560 Zea mays HOM05D003946 ORTHO05D004485 1.3e-09 67.8 87 46.0
Actinidia18308 Actinidia chinensis HOM05D003946 ORTHO05D004485 1.7e-09 67.4 87 46.0
Glyma.13G354200 Glycine max HOM05D003946 ORTHO05D004485 1.7e-09 67.4 79 44.3
Os10g0486900 Oryza sativa ssp. japonica HOM05D003946 ORTHO05D004485 1.7e-09 67.4 87 44.8
TWI63G1262 Tripterygium wilfordii HOM05D003946 ORTHO05D004485 1.7e-09 67.4 87 44.8
Sp7g28360 Schrenkiella parvula HOM05D003946 ORTHO05D004485 2.9e-09 66.6 87 46.0
Thecc.09G157800 Theobroma cacao HOM05D003946 ORTHO05D004485 2.9e-09 66.6 87 44.8
Atru.chr7.424 Acer truncatum HOM05D003946 ORTHO05D004485 4.9e-09 65.9 86 43.0
TWI34G0749 Tripterygium wilfordii HOM05D003946 ORTHO05D004485 4.9e-09 65.9 87 43.7
Thhalv10025952m.g Eutrema salsugineum HOM05D003946 ORTHO05D004485 6.4e-09 65.5 87 44.8
Ah.09g228630 Amaranthus hybridus HOM05D003946 ORTHO05D004485 8.4e-09 65.1 86 41.9
Aqoxy3G01561 Aquilegia oxysepala HOM05D003946 ORTHO05D004485 1.1e-08 64.7 86 44.2
THA.LOC104803531 Tarenaya hassleriana HOM05D003946 ORTHO05D004485 1.1e-08 64.7 92 44.6
Aqoxy4G03046 Aquilegia oxysepala HOM05D002273 ORTHO05D004485 2.4e-08 63.5 82 41.5
Prupe.1G099700 Prunus persica HOM05D003946 ORTHO05D004485 2.4e-08 63.5 86 41.9
COL.COLO4_10067 Corchorus olitorius HOM05D003946 ORTHO05D004485 3.2e-08 63.2 87 43.7
HanXRQChr09g0244711 Helianthus annuus HOM05D003946 ORTHO05D004485 3.2e-08 63.2 88 44.3
Potri.006G178900 Populus trichocarpa HOM05D003946 ORTHO05D004485 4.2e-08 62.8 87 41.4
Prupe.8G039000 Prunus persica HOM05D003946 ORTHO05D004485 4.2e-08 62.8 86 41.9
FvH4_3g34740 Fragaria vesca HOM05D003946 ORTHO05D004485 5.4e-08 62.4 86 40.7
FvH4_4g08690 Fragaria vesca HOM05D003946 ORTHO05D004485 5.4e-08 62.4 86 41.9
FAN11G0842 Fragaria x ananassa HOM05D003946 ORTHO05D004485 5.4e-08 62.4 86 40.7
FAN15G3651 Fragaria x ananassa HOM05D003946 ORTHO05D004485 5.4e-08 62.4 86 40.7
FAN16G0870 Fragaria x ananassa HOM05D003946 ORTHO05D004485 5.4e-08 62.4 86 40.7
HanXRQChr03g0065991 Helianthus annuus HOM05D003946 ORTHO05D004485 5.4e-08 62.4 86 41.9
Lsat_1_v5_gn_5_88241 Lactuca sativa HOM05D003946 ORTHO05D004485 7.1e-08 62.0 120 34.2
Actinidia38658 Actinidia chinensis HOM05D003946 ORTHO05D004485 9.3e-08 61.6 104 38.5
Duzib168G2206 Durio zibethinus HOM05D003946 ORTHO05D004485 9.3e-08 61.6 85 42.4
FAN25G1583 Fragaria x ananassa HOM05D003946 ORTHO05D004485 1.2e-07 61.2 86 40.7
CAN.G1041.30 Capsicum annuum HOM05D000307 ORTHO05D017740 1.6e-07 60.8 128 35.2
Cc00_g22900 Coffea canephora HOM05D003946 ORTHO05D004485 1.6e-07 60.8 37 78.4
Cc00_g34860 Coffea canephora HOM05D003946 ORTHO05D004485 1.6e-07 60.8 37 78.4
Lsat_1_v5_gn_7_51160 Lactuca sativa HOM05D003946 ORTHO05D004485 1.6e-07 60.8 86 39.5
Ah.14g084270 Amaranthus hybridus HOM05D003946 ORTHO05D004485 2.1e-07 60.5 87 40.2
Thhalv10000290m.g Eutrema salsugineum HOM05D003946 ORTHO05D004485 2.1e-07 60.5 87 41.4
Lj9A725T27 Lonicera japonica HOM05D003946 ORTHO05D004485 2.1e-07 60.5 83 41.0
MD04G1009600 Malus domestica HOM05D003946 ORTHO05D004485 2.1e-07 60.5 87 40.2
Mapoly0119s0026 Marchantia polymorpha HOM05D003946 ORTHO05D004485 2.1e-07 60.5 114 34.2
Potri.018G100700 Populus trichocarpa HOM05D003946 ORTHO05D004485 2.1e-07 60.5 87 41.4
Rhsim03G0261300 Rhododendron simsii HOM05D003946 ORTHO05D004485 2.1e-07 60.5 87 42.5
vmacro06046 Vaccinium macrocarpon HOM05D003946 ORTHO05D004485 2.1e-07 60.5 87 42.5
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.7e-07 60.1 85 43.5
CBR_g12383 Chara braunii HOM05D003946 ORTHO05D004485 2.7e-07 60.1 87 39.1
MD16G1260600 Malus domestica HOM05D003946 ORTHO05D004485 2.7e-07 60.1 86 41.9
Sabra06G0135900 Salix brachista HOM05D003946 ORTHO05D004485 2.7e-07 60.1 87 40.2
A01p07700 Brassica napus HOM05D003946 ORTHO05D004485 6.0e-07 58.9 53 60.4
C01p08570 Brassica napus HOM05D003946 ORTHO05D004485 6.0e-07 58.9 53 60.4
BraA01t00713Z Brassica rapa HOM05D003946 ORTHO05D004485 6.0e-07 58.9 53 60.4
FAN12G3120 Fragaria x ananassa HOM05D003946 ORTHO05D004485 6.0e-07 58.9 82 41.5
FAN27G0955 Fragaria x ananassa HOM05D003946 ORTHO05D004485 7.9e-07 58.5 86 37.2
Sopen12g029630 Solanum pennellii HOM05D000307 ORTHO05D000166 1.0e-06 58.2 83 44.6
PGSC0003DMG400034827 Solanum tuberosum HOM05D000307 ORTHO05D000166 1.0e-06 58.2 92 37.0
RcHm_v2.0_Chr4g0405181 Rosa chinensis HOM05D003946 ORTHO05D004485 1.3e-06 57.8 86 39.5
CAN.G129.54 Capsicum annuum HOM05D000001 ORTHO05D115698 3.0e-06 56.6 83 47.0
Sp4g02820 Schrenkiella parvula HOM05D003946 ORTHO05D004485 3.0e-06 56.6 87 40.2
GSVIVG01023716001 Vitis vinifera HOM05D003946 ORTHO05D004485 5.1e-06 55.8 92 41.3
BcaC02g08518 Brassica carinata HOM05D003946 ORTHO05D004485 6.6e-06 55.5 87 39.1
C04p53510 Brassica napus HOM05D003946 ORTHO05D004485 6.6e-06 55.5 87 39.1
BolC4t26905H Brassica oleracea HOM05D003946 ORTHO05D004485 6.6e-06 55.5 87 39.1
Sed0007467 Sechium edule HOM05D003946 ORTHO05D004485 8.7e-06 55.1 87 36.8


User provided reference genes

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