Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G342.14 Capsicum annuum HOM05D006317 ORTHO05D007852 1.0e-58 229.9 122 100.0
Nitab4.5_0001168g0010 Nicotiana tabacum HOM05D006317 ORTHO05D007852 8.0e-56 220.3 122 95.9
Solyc11g005000.2 Solanum lycopersicum HOM05D006317 ORTHO05D007852 1.8e-55 219.2 122 95.9
Nitab4.5_0002045g0100 Nicotiana tabacum HOM05D006317 ORTHO05D007852 2.3e-55 218.8 122 95.1
PGSC0003DMG400006049 Solanum tuberosum HOM05D006317 ORTHO05D007852 3.1e-55 218.4 122 95.9
Peaxi162Scf01003g00121 Petunia axillaris HOM05D006317 ORTHO05D007852 3.4e-54 214.9 122 93.4
Sopen11g001020 Solanum pennellii HOM05D006317 ORTHO05D007852 3.4e-54 214.9 122 94.3
MSTRG.25364 Avicennia marina HOM05D006317 ORTHO05D007852 8.6e-50 200.3 122 82.8
Oeu051968.1 Olea europaea HOM05D006317 ORTHO05D007852 5.6e-49 197.6 122 82.8
FvH4_2g27730 Fragaria vesca HOM05D006317 ORTHO05D007852 1.2e-48 196.4 122 80.3
FAN20G1754 Fragaria x ananassa HOM05D006317 ORTHO05D007852 1.2e-48 196.4 122 80.3
RcHm_v2.0_Chr6g0296581 Rosa chinensis HOM05D006317 ORTHO05D007852 1.6e-48 196.1 122 82.0
GSVIVG01036785001 Vitis vinifera HOM05D006317 ORTHO05D007852 2.1e-48 195.7 122 82.0
FAN24G3505 Fragaria x ananassa HOM05D006317 ORTHO05D007852 3.6e-48 194.9 122 79.5
TAR375G0871 Trochodendron aralioides HOM05D006317 ORTHO05D007852 4.7e-48 194.5 122 80.3
ECA246G3352 Erigeron canadensis HOM05D006317 ORTHO05D007852 1.1e-47 193.4 122 80.3
Oeu021883.1 Olea europaea HOM05D006317 ORTHO05D007852 1.1e-47 193.4 122 80.3
Dinv14667 Davidia involucrata HOM05D006317 ORTHO05D007852 1.4e-47 193.0 122 82.0
Cfa018120 Carpinus fangiana HOM05D006317 ORTHO05D007852 1.8e-47 192.6 120 80.0
Lsat_1_v5_gn_6_109060 Lactuca sativa HOM05D006317 ORTHO05D007852 2.3e-47 192.2 122 78.7
Migut.N03266 Erythranthe guttata HOM05D006317 ORTHO05D007852 3.1e-47 191.8 122 81.1
CsaV3_6G034090 Cucumis sativus L. HOM05D006317 ORTHO05D007852 4.0e-47 191.4 122 80.3
Sed0004620 Sechium edule HOM05D006317 ORTHO05D007852 4.0e-47 191.4 122 79.5
Thecc.08G132100 Theobroma cacao HOM05D006317 ORTHO05D007852 4.0e-47 191.4 122 80.3
CSS0008085 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 8.9e-47 190.3 122 79.5
CSS0027136 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 1.2e-46 189.9 122 79.5
MELO3C010655.2 Cucumis melo HOM05D006317 ORTHO05D007852 1.2e-46 189.9 122 81.1
Dinv27277 Davidia involucrata HOM05D006317 ORTHO05D007852 1.2e-46 189.9 122 79.5
Hma1.2p1_0420F.1_g149670 Hydrangea macrophylla HOM05D006317 ORTHO05D007852 1.2e-46 189.9 121 78.5
Sc10g0008060 Simmondsia chinensis HOM05D006317 ORTHO05D007852 1.2e-46 189.9 122 78.7
Eucgr.D00248 Eucalyptus grandis HOM05D006317 ORTHO05D007852 1.5e-46 189.5 122 77.9
Sed0014816 Sechium edule HOM05D006317 ORTHO05D007852 1.5e-46 189.5 122 80.3
QL09p032738 Quercus lobata HOM05D006317 ORTHO05D007852 2.0e-46 189.1 120 80.0
Cc10_g12550 Coffea canephora HOM05D006317 ORTHO05D007852 2.6e-46 188.7 122 80.3
Duzib041G0795 Durio zibethinus HOM05D006317 ORTHO05D007852 4.4e-46 188.0 122 77.9
TWI32G0551 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 4.4e-46 188.0 120 79.2
Cpa.g.sc64.145 Carica papaya HOM05D006317 ORTHO05D007852 5.8e-46 187.6 122 78.7
Rhsim11G0071000 Rhododendron simsii HOM05D006317 ORTHO05D007852 7.5e-46 187.2 122 77.9
CSS0006686 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 1.3e-45 186.4 122 77.0
CANSAT35G0412 Cannabis sativa HOM05D006317 ORTHO05D007852 1.3e-45 186.4 122 77.0
Ciclev10002865m.g Citrus clementina HOM05D006317 ORTHO05D007852 1.3e-45 186.4 122 77.0
Duzib116G0606 Durio zibethinus HOM05D006317 ORTHO05D007852 1.3e-45 186.4 122 77.0
Medtr3g088525 Medicago truncatula HOM05D006317 ORTHO05D007852 1.3e-45 186.4 120 80.0
Prupe.1G490600 Prunus persica HOM05D006317 ORTHO05D007852 1.3e-45 186.4 122 77.9
unitig_22.g5398 Utricularia gibba HOM05D006317 ORTHO05D007852 1.3e-45 186.4 122 78.7
Manes.02G167400 Manihot esculenta HOM05D006317 ORTHO05D007852 1.7e-45 186.0 122 76.2
Glyma.04G246100 Glycine max HOM05D006317 ORTHO05D007852 3.7e-45 184.9 120 80.0
Nn1g09356 Nelumbo nucifera HOM05D006317 ORTHO05D007852 3.7e-45 184.9 122 74.6
Actinidia29484 Actinidia chinensis HOM05D006317 ORTHO05D007852 4.9e-45 184.5 119 79.0
unitig_8.g3836 Utricularia gibba HOM05D006317 ORTHO05D007852 6.4e-45 184.1 122 77.0
Gohir.A05G237800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 8.3e-45 183.7 122 77.9
Psat5g085080 Pisum sativum HOM05D006317 ORTHO05D007852 1.1e-44 183.3 120 79.2
Potri.019G066600 Populus trichocarpa HOM05D006317 ORTHO05D007852 1.1e-44 183.3 121 76.0
Lj1g0010212 Lotus japonicus HOM05D006317 ORTHO05D007852 1.4e-44 183.0 120 79.2
Aqoxy1G01739 Aquilegia oxysepala HOM05D006317 ORTHO05D007852 1.9e-44 182.6 122 77.9
CiPaw.15G032500 Carya illinoinensis HOM05D006317 ORTHO05D007852 1.9e-44 182.6 120 76.7
HanXRQChr05g0148711 Helianthus annuus HOM05D006317 ORTHO05D007852 1.9e-44 182.6 115 80.0
Manes.18G081900 Manihot esculenta HOM05D006317 ORTHO05D007852 1.9e-44 182.6 122 74.6
TWI34G0863 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 2.4e-44 182.2 120 76.7
Glyma.06G116700 Glycine max HOM05D006317 ORTHO05D007852 3.2e-44 181.8 120 79.2
PGR044G1554 Punica granatum HOM05D006317 ORTHO05D007852 3.2e-44 181.8 122 76.2
Gohir.D05G239800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 4.1e-44 181.4 122 77.0
Gorai.009G248700 Gossypium raimondii HOM05D006317 ORTHO05D007852 4.1e-44 181.4 122 77.0
ATR1101G062 Amborella trichopoda HOM05D006317 ORTHO05D007852 7.1e-44 180.6 122 74.6
MBI03_g35425_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 2.1e-43 179.1 122 72.1
Phvul.009G129100 Phaseolus vulgaris HOM05D006317 ORTHO05D007852 2.1e-43 179.1 120 76.7
VMungo1309G0699 Vigna mungo HOM05D006317 ORTHO05D007852 2.7e-43 178.7 120 78.3
Atru.chr13.1550 Acer truncatum HOM05D006317 ORTHO05D007852 4.6e-43 177.9 122 73.8
Lalb_Chr08g0241161 Lupinus albus HOM05D006317 ORTHO05D007852 4.6e-43 177.9 120 76.7
arahy.Tifrunner.gnm1.ann1.0GY0RD Arachis hypogaea HOM05D006317 ORTHO05D007852 7.8e-43 177.2 123 74.8
arahy.Tifrunner.gnm1.ann1.ID1H8K Arachis hypogaea HOM05D006317 ORTHO05D007852 7.8e-43 177.2 123 74.8
SGA_v2.0_scaffold25G11134 Striga asiatica HOM05D006317 ORTHO05D007852 1.0e-42 176.8 109 82.6
Aa31LG4G7370 Aethionema arabicum HOM05D006317 ORTHO05D007852 1.7e-42 176.0 122 72.1
THA.LOC104813677 Tarenaya hassleriana HOM05D006317 ORTHO05D007852 3.0e-42 175.3 122 72.1
SalBow2G0856 Salvia bowleyana HOM05D006317 ORTHO05D007852 3.9e-42 174.9 115 78.3
Thhalv10019323m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 5.1e-42 174.5 122 71.3
AT1G77350 Arabidopsis thaliana HOM05D006317 ORTHO05D007852 8.6e-42 173.7 123 71.5
Carub.0002s2423 Capsella rubella HOM05D006317 ORTHO05D007852 1.1e-41 173.3 122 69.7
CARHR070830 Cardamine hirsuta HOM05D006317 ORTHO05D007852 1.1e-41 173.3 122 70.5
BraA06t24865Z Brassica rapa HOM05D006317 ORTHO05D007852 5.6e-41 171.0 122 70.5
A06p17730 Brassica napus HOM05D006317 ORTHO05D007852 7.3e-41 170.6 122 70.5
Lalb_Chr23g0271161 Lupinus albus HOM05D006317 ORTHO05D007852 7.3e-41 170.6 121 72.7
BcaB07g32159 Brassica carinata HOM05D006317 ORTHO05D007852 1.6e-40 169.5 122 69.7
A08p28870 Brassica napus HOM05D006317 ORTHO05D007852 1.6e-40 169.5 122 70.5
ClCG08G005990 Citrullus lanatus HOM05D006317 ORTHO05D007852 2.8e-40 168.7 172 57.0
C08p20980 Brassica napus HOM05D006317 ORTHO05D007852 3.6e-40 168.3 122 69.7
BolC8t49735H Brassica oleracea HOM05D006317 ORTHO05D007852 3.6e-40 168.3 122 69.7
CDE06G2198 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 3.6e-40 168.3 122 69.7
Sp1g19190 Schrenkiella parvula HOM05D006317 ORTHO05D007852 3.6e-40 168.3 122 69.7
Ah.01g020580 Amaranthus hybridus HOM05D006317 ORTHO05D007852 6.2e-40 167.5 122 68.9
BraA08t34818Z Brassica rapa HOM05D006317 ORTHO05D007852 8.1e-40 167.2 122 69.7
Thhalv10009123m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 1.8e-39 166.0 123 70.7
Sabra19G0078300 Salix brachista HOM05D006317 ORTHO05D007852 3.1e-39 165.2 135 66.7
CDE07G1891 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 6.8e-39 164.1 120 70.0
AUR62016336 Chenopodium quinoa HOM05D006317 ORTHO05D007852 6.8e-39 164.1 122 68.0
BcaB03g14259 Brassica carinata HOM05D006317 ORTHO05D007852 8.9e-39 163.7 117 70.1
Zm00001eb128810 Zea mays HOM05D006317 ORTHO05D007852 1.2e-38 163.3 122 69.7
BcaC06g34898 Brassica carinata HOM05D006317 ORTHO05D007852 3.4e-38 161.8 116 69.8
BolC7t42733H Brassica oleracea HOM05D006317 ORTHO05D007852 3.4e-38 161.8 116 69.8
C07p22030 Brassica napus HOM05D006317 ORTHO05D007852 7.6e-38 160.6 115 69.6
AL2G37550 Arabidopsis lyrata HOM05D006317 ORTHO05D007852 9.9e-38 160.2 148 60.1
A07p14980 Brassica napus HOM05D006317 ORTHO05D007852 1.3e-37 159.8 116 69.0
BraA07t29244Z Brassica rapa HOM05D006317 ORTHO05D007852 1.3e-37 159.8 116 69.0
Os05g0486200 Oryza sativa ssp. japonica HOM05D006317 ORTHO05D007852 3.7e-37 158.3 118 67.8
HPP92_021212 Vanilla planifolia HOM05D006317 ORTHO05D007852 5.4e-36 154.5 119 68.1
SHI09189 Sapria himalayana HOM05D006317 ORTHO05D007852 7.1e-36 154.1 131 61.8
AagrBONN_evm.TU.Sc2ySwM_344.4689 Anthoceros agrestis HOM05D006317 ORTHO05D007852 1.2e-35 153.3 119 63.0
MBI06_g36652_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 1.2e-35 153.3 122 65.6
Mapoly0014s0111 Marchantia polymorpha HOM05D006317 ORTHO05D007852 3.9e-34 148.3 121 62.0
FAN27G3154 Fragaria x ananassa HOM05D006317 ORTHO05D007852 6.6e-34 147.5 91 80.2
COL.COLO4_05688 Corchorus olitorius HOM05D006317 ORTHO05D007852 4.7e-32 141.4 91 79.1
vmacro16444 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 6.2e-32 141.0 94 78.7
vmacro00858 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 3.1e-31 138.7 91 78.0
CBR_g12067 Chara braunii HOM05D006317 ORTHO05D007852 2.6e-30 135.6 104 64.4
SMO298G0052 Selaginella moellendorffii HOM05D006317 ORTHO05D007852 7.6e-30 134.0 101 66.3
EL10Ac9g21899 Beta vulgaris HOM05D006317 ORTHO05D007852 2.1e-27 125.9 91 69.2
BcaB03g14260 Brassica carinata HOM05D006317 ORTHO05D007852 7.3e-25 117.5 125 55.2
Nn7g37402 Nelumbo nucifera HOM05D006317 ORTHO05D007852 5.3e-23 111.3 70 75.7
DCAR_018876 Daucus carota HOM05D006317 ORTHO05D007852 1.2e-22 110.2 69 78.3
Haze_17997 Corylus avellana HOM05D001650 ORTHO05D001592 1.2e-19 100.1 62 77.4
CSS0043705 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 1.5e-14 83.2 46 78.3
Gohir.A02G071601 Gossypium hirsutum HOM05D006317 ORTHO05D007852 2.0e-14 82.8 58 72.4
SGA_v2.0_scaffold28G11977 Striga asiatica HOM05D006317 ORTHO05D007852 2.0e-14 82.8 52 82.7
BolC5t30761H Brassica oleracea HOM05D006317 ORTHO05D007852 5.1e-10 68.2 52 71.2
FAN15G1039 Fragaria x ananassa HOM05D006317 ORTHO05D007852 1.5e-09 66.6 34 88.2
QL05p046423 Quercus lobata HOM05D006317 ORTHO05D007852 2.4e-07 59.3 51 60.8


User provided reference genes

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