Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 1.3e-106 389.8 202 100.0
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 4.2e-78 295.0 204 79.9
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 2.8e-77 292.4 203 78.8
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.8e-76 289.7 204 77.9
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 4.0e-76 288.5 195 75.9
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 2.0e-75 286.2 193 76.7
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 9.8e-75 283.9 193 76.7
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 3.4e-59 232.3 194 63.4
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 7.8e-56 221.1 201 58.7
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 1.7e-55 219.9 159 66.7
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 3.0e-55 219.2 196 60.7
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 3.4e-51 205.7 195 53.8
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 5.8e-51 204.9 156 59.6
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 1.3e-50 203.8 198 54.5
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 3.2e-49 199.1 138 65.9
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 9.2e-49 197.6 193 51.8
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 9.2e-49 197.6 203 53.7
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.6e-48 196.8 196 54.1
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 7.8e-48 194.5 195 53.3
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.8e-48 194.5 195 53.3
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 1.0e-47 194.1 152 59.2
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.3e-47 193.7 195 53.8
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.3e-47 193.7 195 53.3
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 1.3e-47 193.7 152 59.2
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.7e-47 193.4 199 52.3
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 1.7e-47 193.4 196 53.6
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 2.3e-47 193.0 152 62.5
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 3.0e-47 192.6 156 57.7
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 3.0e-47 192.6 196 56.1
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 1.1e-46 190.7 159 57.9
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 1.5e-46 190.3 195 51.8
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 2.5e-46 189.5 192 53.1
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 4.3e-46 188.7 195 52.3
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 5.6e-46 188.3 195 50.3
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 7.3e-46 188.0 195 52.3
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 9.6e-46 187.6 202 52.0
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.6e-45 186.8 192 52.6
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.6e-45 186.8 153 61.4
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 3.6e-45 185.7 151 56.3
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 3.6e-45 185.7 156 59.0
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 6.2e-45 184.9 195 51.3
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 8.1e-45 184.5 169 53.8
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 1.1e-44 184.1 126 66.7
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 5.2e-44 181.8 200 51.0
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 6.8e-44 181.4 165 52.7
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 6.8e-44 181.4 186 50.5
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 8.9e-44 181.0 194 52.6
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.5e-43 180.3 152 55.3
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 2.0e-43 179.9 139 59.0
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 2.6e-43 179.5 194 50.5
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 4.4e-43 178.7 171 52.6
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 5.8e-43 178.3 177 49.2
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 7.6e-43 177.9 198 48.0
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 7.6e-43 177.9 161 52.8
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 9.9e-43 177.6 194 50.0
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 2.9e-42 176.0 171 54.4
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 3.8e-42 175.6 155 58.1
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 3.8e-42 175.6 155 58.1
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 6.4e-42 174.9 165 53.3
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 6.4e-42 174.9 159 52.2
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 8.4e-42 174.5 195 47.2
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.4e-41 172.9 177 49.7
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 2.4e-41 172.9 187 48.1
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 3.2e-41 172.6 148 55.4
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 4.2e-41 172.2 162 52.5
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 9.3e-41 171.0 162 51.2
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 2.7e-40 169.5 161 50.3
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.5e-40 169.1 194 45.9
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.5e-40 169.1 194 45.9
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 7.8e-40 167.9 163 54.0
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 1.7e-39 166.8 180 50.0
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 3.9e-39 165.6 169 49.1
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 5.1e-39 165.2 158 51.9
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 8.7e-39 164.5 167 48.5
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 2.5e-38 162.9 194 46.4
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 2.5e-38 162.9 205 45.4
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 3.3e-38 162.5 199 46.2
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 5.6e-38 161.8 195 49.2
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 2.8e-37 159.5 155 52.3
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 2.8e-37 159.5 144 52.8
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 1.4e-36 157.1 199 46.7
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 6.9e-36 154.8 176 46.0
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 6.9e-36 154.8 176 46.0
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 1.5e-35 153.7 174 45.4
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.5e-35 153.7 156 49.4
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 4.4e-35 152.1 157 47.8
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 5.8e-35 151.8 194 42.3
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 7.6e-35 151.4 157 50.3
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 2.9e-34 149.4 192 45.3
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.9e-34 148.7 181 45.3
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 6.4e-34 148.3 194 40.2
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 6.4e-34 148.3 157 46.5
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 8.4e-34 147.9 156 47.4
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 8.4e-34 147.9 156 46.8
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 1.1e-33 147.5 156 46.8
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 3.2e-33 146.0 164 46.3
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 4.2e-33 145.6 150 47.3
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 5.4e-33 145.2 154 45.5
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 7.1e-33 144.8 159 46.5
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 1.6e-32 143.7 156 46.2
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 3.5e-32 142.5 164 45.1
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 6.0e-32 141.7 159 47.2
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 6.0e-32 141.7 101 61.4
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 1.0e-31 141.0 159 47.2
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 1.7e-31 140.2 197 39.1
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.7e-31 140.2 163 43.6
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 1.7e-31 140.2 164 45.1
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 2.3e-31 139.8 165 46.1
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 2.3e-31 139.8 165 46.1
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 3.9e-31 139.0 160 44.4
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 5.1e-31 138.7 160 44.4
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 6.6e-31 138.3 165 45.5
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 8.7e-31 137.9 160 45.6
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.9e-30 136.7 160 43.8
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 1.9e-30 136.7 151 48.3
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 3.3e-30 136.0 170 43.5
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 7.3e-30 134.8 151 47.0
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 9.6e-30 134.4 172 40.7
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.3e-29 134.0 182 40.7
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 1.3e-29 134.0 145 46.9
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 2.8e-29 132.9 158 43.0
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 4.8e-29 132.1 175 40.6
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 4.8e-29 132.1 175 40.6
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 6.2e-29 131.7 171 42.1
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 8.1e-29 131.3 165 44.2
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 1.1e-28 131.0 195 40.0
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 1.4e-28 130.6 150 44.0
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 6.9e-28 128.3 201 41.8
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 9.0e-28 127.9 145 42.8
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 4.5e-27 125.6 159 43.4
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 7.6e-27 124.8 110 52.7
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 6.4e-26 121.7 163 42.9
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 1.4e-25 120.6 193 39.9
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 4.2e-25 119.0 193 39.9
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 5.4e-25 118.6 193 39.4
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.6e-24 117.1 192 38.5
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 7.9e-24 114.8 118 47.5
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 1.0e-23 114.4 193 36.8
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 5.1e-23 112.1 193 36.3
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 7.4e-22 108.2 110 47.3
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 1.3e-21 107.5 137 43.8
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 2.1e-21 106.7 157 42.0
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 1.1e-20 104.4 164 40.2
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 3.1e-20 102.8 157 38.9
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 4.5e-19 99.0 152 39.5
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.9e-18 96.3 159 40.9
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 6.5e-18 95.1 129 38.8
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 1.4e-17 94.0 102 44.1
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.5e-17 93.2 205 33.7
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 2.5e-17 93.2 144 35.4
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 2.1e-16 90.1 194 36.1
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 7.9e-16 88.2 153 34.0
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.1e-14 84.3 150 33.3
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 9.6e-14 81.3 172 33.7
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 2.8e-13 79.7 107 44.9
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 4.1e-12 75.9 155 35.5
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.3e-12 75.5 121 33.9
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 9.0e-12 74.7 143 32.2
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 1.1e-09 67.8 136 34.6
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.4e-09 67.4 132 32.6
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.5e-09 66.6 143 29.4
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 3.2e-09 66.2 164 31.1
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 7.1e-09 65.1 143 30.8
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 9.3e-09 64.7 174 32.2
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 2.7e-08 63.2 151 30.5
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 4.6e-08 62.4 122 32.8
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.3e-07 60.8 124 35.5
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 8.7e-07 58.2 154 30.5
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 8.7e-07 58.2 154 30.5


User provided reference genes

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