Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 1.2e-187 660.2 413 100.0
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.7e-178 629.8 417 93.5
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.7e-178 629.8 417 93.5
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 9.5e-177 624.0 413 93.2
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.2e-176 623.6 413 88.6
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.0e-158 563.1 413 82.6
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 9.9e-158 560.8 402 77.1
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 6.4e-157 558.1 416 75.5
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.8e-154 550.1 406 82.3
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 2.3e-154 549.7 402 84.8
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 4.3e-153 545.4 402 77.6
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 5.6e-153 545.0 406 86.0
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.3e-152 543.9 413 83.8
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.3e-152 543.9 413 83.8
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 3.7e-152 542.3 409 80.2
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 4.8e-152 542.0 410 81.5
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 3.1e-151 539.3 410 81.0
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.2e-150 537.3 409 82.4
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 2.6e-150 536.2 409 79.0
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 3.4e-150 535.8 409 83.6
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.3e-149 533.9 429 72.7
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.2e-149 533.1 403 82.6
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 2.9e-149 532.7 417 82.5
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 2.9e-149 532.7 413 83.8
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 6.4e-149 531.6 429 72.5
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.4e-148 530.4 413 81.4
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.9e-148 530.0 402 83.8
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 9.3e-148 527.7 410 85.6
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 9.3e-148 527.7 409 73.3
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 2.1e-147 526.6 402 83.6
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 3.5e-147 525.8 409 82.4
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 4.6e-147 525.4 409 80.7
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 6.0e-147 525.0 402 83.8
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 7.9e-147 524.6 409 81.2
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.3e-146 523.1 410 82.0
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.9e-146 522.3 409 81.7
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 6.7e-146 521.5 412 81.6
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 8.7e-146 521.2 410 81.2
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.5e-145 520.4 409 81.9
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 1.5e-145 520.4 404 78.2
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.9e-145 520.0 409 81.9
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 4.3e-145 518.8 409 81.7
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 4.3e-145 518.8 415 80.7
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 7.4e-145 518.1 412 80.3
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 9.6e-145 517.7 409 80.9
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 9.6e-145 517.7 409 81.4
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 1.3e-144 517.3 409 74.6
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 1.3e-144 517.3 413 81.1
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.6e-144 516.9 412 80.6
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.8e-144 516.2 409 81.4
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 2.8e-144 516.2 402 82.3
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 4.8e-144 515.4 394 84.0
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.8e-143 513.5 409 80.9
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 9.0e-143 511.1 406 81.3
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 9.0e-143 511.1 402 80.3
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 2.6e-142 509.6 405 79.8
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 3.4e-142 509.2 405 75.6
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 7.6e-142 508.1 407 81.3
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 2.2e-141 506.5 427 77.3
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 2.2e-141 506.5 416 78.6
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 2.9e-141 506.1 410 79.5
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 8.4e-141 504.6 410 79.8
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 1.1e-140 504.2 397 74.3
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 4.2e-140 502.3 405 77.8
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 1.2e-139 500.7 407 80.8
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.5e-139 499.2 410 73.7
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 4.6e-139 498.8 401 72.8
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 7.9e-139 498.0 414 72.9
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 7.9e-139 498.0 410 73.4
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 7.9e-139 498.0 407 72.7
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.8e-138 496.9 404 77.0
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.3e-138 496.5 401 74.1
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 3.0e-138 496.1 410 79.5
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.7e-138 495.0 405 69.1
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 6.7e-138 495.0 397 80.4
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.1e-137 494.2 414 67.9
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 4.1e-135 485.7 409 79.5
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 6.9e-135 485.0 398 67.8
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 2.6e-134 483.0 406 76.1
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 4.5e-134 482.3 405 73.8
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.7e-133 480.3 522 63.8
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 3.2e-132 476.1 534 61.8
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 3.6e-131 472.6 405 74.1
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 3.6e-131 472.6 405 74.1
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 3.6e-131 472.6 405 74.1
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 4.6e-131 472.2 391 76.7
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 1.4e-130 470.7 405 74.6
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.8e-130 470.3 393 75.8
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 2.3e-130 469.9 396 75.0
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 3.0e-130 469.5 392 78.6
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 3.3e-129 466.1 397 70.8
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 5.7e-129 465.3 408 73.3
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 7.4e-129 464.9 405 73.3
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 7.4e-129 464.9 405 73.3
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.7e-128 463.8 389 76.3
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 3.7e-128 462.6 393 74.6
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.8e-128 462.2 397 75.8
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 4.8e-128 462.2 426 65.5
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 8.2e-128 461.5 406 73.6
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.4e-127 460.7 411 75.7
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.9e-126 455.3 422 67.5
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 7.7e-126 454.9 364 81.6
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 2.9e-125 453.0 402 76.1
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 3.8e-125 452.6 411 74.7
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 1.1e-124 451.1 411 74.5
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.9e-124 450.3 411 64.2
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 6.1e-123 445.3 406 61.1
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.5e-118 429.5 408 61.5
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 5.0e-117 425.6 397 68.8
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 6.1e-115 418.7 404 61.9
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 6.1e-115 418.7 404 61.9
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-113 414.5 420 60.7
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.3e-112 411.0 427 60.7
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-112 410.6 400 60.5
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 2.8e-112 409.8 392 68.9
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 4.8e-112 409.1 398 59.3
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 4.1e-111 406.0 452 51.3
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 5.3e-111 405.6 396 59.8
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 7.0e-111 405.2 393 68.2
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 2.0e-110 403.7 390 67.9
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 4.5e-110 402.5 421 57.2
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 5.0e-109 399.1 417 54.9
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 5.0e-109 399.1 373 62.2
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 2.3e-106 390.2 392 71.7
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 8.8e-106 388.3 430 55.1
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.3e-105 386.3 408 65.9
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.0e-102 377.1 410 55.6
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 2.5e-100 370.2 419 53.9
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 7.5e-97 358.6 336 64.9
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 2.7e-94 350.1 403 52.6
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-92 344.4 395 50.6
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.0e-89 334.0 367 56.7
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-86 324.7 388 47.9
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 7.3e-84 315.5 320 68.4
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 9.5e-84 315.1 197 74.6
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 4.7e-83 312.8 428 50.2
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.3e-72 278.1 194 69.1
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 6.4e-72 275.8 398 43.2
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.9e-71 274.2 388 52.3
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.9e-68 264.2 294 69.4
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 3.3e-68 263.5 256 64.1
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 2.5e-60 237.3 262 56.9
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 3.6e-59 233.4 262 56.5
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.8e-58 231.1 115 91.3
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.4e-55 219.5 115 86.1
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.6e-54 218.0 181 61.3
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 5.8e-49 199.5 125 76.0
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 4.9e-48 196.4 167 58.7
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 4.2e-47 193.4 167 58.1
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 7.3e-44 182.6 88 93.2
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-40 171.0 116 67.2
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 3.8e-40 170.2 358 38.8
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 1.6e-35 154.8 183 50.3
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 4.5e-33 146.7 104 70.2
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 2.2e-32 144.4 95 73.7
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 2.5e-28 131.0 187 43.9
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 3.3e-28 130.6 81 76.5
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 4.3e-28 130.2 155 47.1
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 5.0e-24 116.7 57 86.0
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 5.5e-23 113.2 72 76.4
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 9.3e-23 112.5 90 58.9
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 7.4e-20 102.8 115 47.8
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 9.7e-20 102.4 49 85.7
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 3.7e-19 100.5 83 57.8
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.4e-18 98.6 63 71.4
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 9.0e-18 95.9 78 59.0
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 2.6e-17 94.4 79 53.2
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 2.6e-17 94.4 44 93.2
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 4.5e-17 93.6 43 95.3
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.7e-16 91.7 115 46.1
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 3.2e-15 87.4 120 60.8
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 9.4e-15 85.9 43 86.0
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.6e-14 85.1 45 82.2
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 6.7e-13 79.7 40 90.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 6.7e-13 79.7 40 90.0
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 2.2e-11 74.7 38 86.8
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 5.3e-10 70.1 40 75.0
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 9.1e-10 69.3 46 60.9
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 9.1e-10 69.3 46 60.9
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.5e-07 61.2 52 59.6
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 1.2e-06 58.9 72 41.7
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 1.6e-06 58.5 44 56.8
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 2.7e-06 57.8 77 37.7
Cre17.g723450 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 2.7e-06 57.8 322 23.6
Glyma.07G100800 Glycine max HOM05D002288 ORTHO05D002894 4.7e-06 57.0 200 27.0
TWI12G0929 Tripterygium wilfordii HOM05D000836 ORTHO05D000709 4.7e-06 57.0 71 42.3
Actinidia18910 Actinidia chinensis HOM05D002288 ORTHO05D002894 6.1e-06 56.6 76 36.8


User provided reference genes

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