Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 4.3e-39 164.5 100 100.0
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 2.4e-37 158.7 100 97.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 2.4e-37 158.7 100 97.0
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 5.2e-37 157.5 100 96.0
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.0e-36 155.6 100 94.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.0e-36 155.6 100 94.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 5.8e-36 154.1 100 77.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 8.7e-32 140.2 100 75.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 4.3e-31 137.9 100 82.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.1e-30 135.6 100 76.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 2.8e-30 135.2 100 74.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 2.8e-30 135.2 100 77.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 2.8e-30 135.2 100 77.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 6.2e-30 134.0 100 72.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 8.1e-30 133.7 100 75.0
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 1.1e-29 133.3 100 65.0
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.4e-29 132.9 100 77.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 4.0e-29 131.3 100 77.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 5.3e-29 131.0 100 70.0
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 6.9e-29 130.6 100 76.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 6.9e-29 130.6 100 76.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 6.9e-29 130.6 100 70.0
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 9.0e-29 130.2 100 63.0
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 9.0e-29 130.2 100 77.0
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 9.0e-29 130.2 100 74.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 9.0e-29 130.2 100 73.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.5e-28 129.4 100 65.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 1.5e-28 129.4 98 79.6
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 3.4e-28 128.3 100 80.0
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 3.4e-28 128.3 100 74.0
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 4.4e-28 127.9 100 75.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 7.6e-28 127.1 100 69.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 2.9e-27 125.2 100 69.0
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 2.9e-27 125.2 100 76.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 4.9e-27 124.4 100 68.0
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 8.4e-27 123.6 100 79.0
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 8.4e-27 123.6 100 79.0
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 1.9e-26 122.5 100 76.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 1.9e-26 122.5 91 73.6
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 2.4e-26 122.1 93 83.9
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 3.2e-26 121.7 100 78.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 3.2e-26 121.7 100 79.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 3.2e-26 121.7 100 64.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 9.3e-26 120.2 100 64.0
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 1.2e-25 119.8 100 63.0
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.2e-25 119.8 100 64.0
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 2.7e-25 118.6 100 62.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 3.5e-25 118.2 73 76.7
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 4.6e-25 117.9 131 61.1
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 7.8e-25 117.1 93 60.2
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 7.8e-25 117.1 100 71.0
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 1.0e-24 116.7 100 74.0
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 6.6e-24 114.0 100 67.0
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 1.1e-23 113.2 72 73.6
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 1.5e-23 112.8 98 73.5
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 2.5e-23 112.1 100 59.0
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 2.5e-23 112.1 98 64.3
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 7.3e-23 110.5 69 71.0
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 3.6e-22 108.2 100 74.0
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 3.6e-22 108.2 100 74.0
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 4.8e-22 107.8 100 75.0
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 6.2e-22 107.5 100 52.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 1.8e-21 105.9 100 52.0
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 6.9e-21 104.0 100 68.0
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 9.0e-21 103.6 100 60.0
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 1.2e-20 103.2 100 50.0
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 1.5e-20 102.8 100 63.0
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 1.5e-20 102.8 100 60.0
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 4.5e-20 101.3 100 73.0
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 9.9e-20 100.1 91 61.5
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.7e-19 99.4 100 60.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 4.9e-19 97.8 101 57.4
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 4.9e-19 97.8 102 61.8
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 8.4e-19 97.1 102 55.9
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 1.1e-18 96.7 73 58.9
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 2.4e-18 95.5 102 55.9
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 3.2e-18 95.1 72 59.7
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 3.2e-18 95.1 72 59.7
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 3.2e-18 95.1 72 59.7
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 7.1e-18 94.0 100 53.0
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 1.6e-17 92.8 100 49.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 2.1e-17 92.4 102 53.9
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 2.7e-17 92.0 100 49.0
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 2.7e-17 92.0 100 56.0
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 7.9e-17 90.5 100 51.0
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 1.3e-16 89.7 80 55.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 1.5e-15 86.3 102 52.9
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 1.5e-15 86.3 102 52.9
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 2.5e-15 85.5 100 46.0
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 4.8e-14 81.3 53 71.7
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 2.0e-12 75.9 90 47.8
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 2.0e-12 75.9 48 70.8
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 5.8e-12 74.3 100 49.0
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 7.6e-12 73.9 48 68.8
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 7.6e-12 73.9 48 70.8
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 7.6e-12 73.9 64 59.4
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 7.6e-12 73.9 100 48.0
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 1.7e-11 72.8 100 47.0
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 2.9e-11 72.0 100 46.0
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 5.5e-10 67.8 81 51.9
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 7.1e-10 67.4 58 55.2
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 2.1e-09 65.9 48 64.6
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 3.5e-09 65.1 48 58.3
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 3.5e-09 65.1 61 67.2
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 4.6e-09 64.7 61 68.9
DCAR_006239 Daucus carota HOM05D006995 ORTHO05D008870 7.9e-09 63.9 100 49.0
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 3.0e-08 62.0 46 63.0
TAR629G2225 Trochodendron aralioides HOM05D000001 ORTHO05D414751 1.1e-07 60.1 53 73.6
Mapoly0052s0030 Marchantia polymorpha HOM05D006995 ORTHO05D008870 4.3e-07 58.2 67 38.8
SEGI_33834 Sequoiadendron giganteum HOM05D006995 ORTHO05D008870 2.8e-06 55.5 48 52.1


User provided reference genes

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