Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 7.6e-83 310.5 157 100.0
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 3.9e-71 271.6 156 87.2
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 8.2e-69 263.8 156 84.6
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 5.3e-68 261.2 156 84.0
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 4.2e-57 224.9 149 76.5
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 2.5e-49 199.1 155 69.0
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 2.6e-43 179.1 138 66.7
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 1.4e-41 173.3 147 60.5
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 2.5e-41 172.6 144 61.8
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 9.4e-41 170.6 141 63.1
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 3.6e-40 168.7 141 63.1
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 4.7e-40 168.3 141 61.7
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.0e-39 167.2 136 64.7
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.0e-39 167.2 136 64.7
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.0e-39 167.2 136 64.7
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 2.3e-39 166.0 144 62.5
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 5.2e-39 164.9 139 61.9
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 5.2e-39 164.9 141 62.4
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 6.7e-39 164.5 147 57.1
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.5e-38 163.3 144 60.4
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.5e-38 163.3 141 61.0
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 2.0e-38 162.9 160 59.4
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 4.4e-38 161.8 142 59.2
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 5.7e-38 161.4 145 60.7
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 5.7e-38 161.4 136 64.7
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 5.7e-38 161.4 147 55.8
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 5.7e-38 161.4 136 62.5
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 7.4e-38 161.0 141 60.3
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 9.7e-38 160.6 144 63.2
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 9.7e-38 160.6 136 62.5
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 9.7e-38 160.6 141 57.4
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 3.7e-37 158.7 142 62.0
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 3.7e-37 158.7 142 60.6
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 4.8e-37 158.3 151 60.3
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 8.2e-37 157.5 138 62.3
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 1.4e-36 156.8 136 58.8
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 1.8e-36 156.4 138 58.7
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 2.4e-36 156.0 143 61.5
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 2.4e-36 156.0 139 57.6
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 3.1e-36 155.6 141 60.3
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 3.1e-36 155.6 142 62.0
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 4.1e-36 155.2 136 58.8
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 4.1e-36 155.2 136 61.8
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 7.0e-36 154.5 140 58.6
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 7.0e-36 154.5 143 60.8
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 1.6e-35 153.3 142 59.2
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.6e-35 152.5 127 63.8
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 4.5e-35 151.8 141 58.9
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 2.2e-34 149.4 142 59.2
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 2.2e-34 149.4 136 56.6
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.9e-34 149.1 146 55.5
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 2.9e-34 149.1 144 55.6
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 3.8e-34 148.7 127 59.8
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 3.8e-34 148.7 147 57.1
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 5.0e-34 148.3 144 58.3
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 6.5e-34 147.9 141 56.0
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 8.5e-34 147.5 141 60.3
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 8.5e-34 147.5 142 55.6
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.1e-33 147.1 163 51.5
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 1.5e-33 146.7 142 57.0
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.5e-33 146.7 146 55.5
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 2.5e-33 146.0 142 56.3
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 4.2e-33 145.2 148 54.7
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 4.2e-33 145.2 136 56.6
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 5.5e-33 144.8 142 55.6
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 5.5e-33 144.8 142 55.6
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 7.2e-33 144.4 142 53.5
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 1.6e-32 143.3 142 52.8
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 3.6e-32 142.1 142 52.8
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 3.6e-32 142.1 147 53.7
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 6.1e-32 141.4 144 54.2
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 1.0e-31 140.6 142 52.1
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.0e-31 140.6 142 52.1
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 1.0e-31 140.6 142 52.1
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 1.0e-31 140.6 142 52.1
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.4e-31 140.2 142 52.1
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.4e-31 140.2 142 52.1
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.4e-31 140.2 142 52.1
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 3.0e-31 139.0 91 72.5
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 5.2e-31 138.3 149 51.7
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 6.7e-31 137.9 141 51.8
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 1.2e-30 137.1 151 56.3
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 1.5e-30 136.7 169 49.1
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 2.6e-30 136.0 148 50.7
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 7.5e-30 134.4 140 53.6
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 7.5e-30 134.4 98 69.4
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 2.8e-29 132.5 96 64.6
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 8.2e-29 131.0 136 54.4
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 1.1e-28 130.6 170 45.3
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 3.1e-28 129.0 136 51.5
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 4.1e-28 128.6 71 84.5
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 2.0e-27 126.3 99 61.6
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 5.9e-27 124.8 71 76.1
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 5.9e-27 124.8 103 58.3
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 7.7e-27 124.4 84 70.2
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 1.3e-26 123.6 90 68.9
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.7e-26 123.2 70 80.0
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 2.2e-26 122.9 90 67.8
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.9e-26 122.5 119 57.1
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.8e-26 122.1 119 55.5
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 5.0e-26 121.7 96 62.5
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 6.5e-26 121.3 135 53.3
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 9.4e-25 117.5 177 42.9
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 3.0e-23 112.5 180 41.1
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 6.8e-23 111.3 141 46.8
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 8.8e-23 110.9 77 67.5
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 4.4e-22 108.6 139 41.7
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 8.3e-21 104.4 85 57.6
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.1e-20 104.0 145 44.8
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 9.1e-20 100.9 160 36.9
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 2.0e-19 99.8 147 38.1
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 2.1e-16 89.7 197 29.4
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 2.3e-15 86.3 54 72.2
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 2.2e-13 79.7 142 34.5
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 4.9e-13 78.6 56 64.3
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 4.1e-12 75.5 43 74.4
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 2.5e-09 66.2 68 44.1
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 4.3e-09 65.5 136 36.0
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 6.1e-08 61.6 69 42.0
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 3.4e-06 55.8 74 35.1


User provided reference genes

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