Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 0.0e+00 1138.6 588 100.0
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 0.0e+00 1083.6 591 92.7
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 0.0e+00 1082.4 591 92.6
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 0.0e+00 1082.0 591 92.6
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 1.5e-288 995.7 594 84.3
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.6e-282 975.7 552 87.5
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 4.3e-280 967.6 592 83.1
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.2e-279 966.1 562 85.4
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 2.1e-279 965.3 549 86.5
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 6.2e-279 963.8 557 84.7
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.8e-278 962.2 591 81.4
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 4.0e-278 961.1 562 85.1
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.2e-277 959.5 551 85.8
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.0e-277 958.7 560 85.2
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 2.0e-277 958.7 555 85.4
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 5.8e-277 957.2 560 85.0
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 7.6e-277 956.8 545 86.8
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 9.9e-277 956.4 547 86.5
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 9.9e-277 956.4 550 85.8
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.7e-276 955.7 564 84.4
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 2.9e-276 954.9 588 82.7
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 4.9e-276 954.1 589 81.8
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 4.9e-276 954.1 590 80.8
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 8.4e-276 953.4 564 84.0
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.4e-275 951.8 563 84.2
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 4.1e-275 951.0 550 84.9
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 5.4e-275 950.7 588 80.6
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 5.4e-275 950.7 589 81.3
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 7.1e-275 950.3 561 84.1
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.2e-274 949.5 588 80.4
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 2.7e-274 948.3 563 84.2
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 3.5e-274 948.0 591 80.7
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 3.5e-274 948.0 549 84.7
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 4.6e-274 947.6 587 81.4
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 7.8e-274 946.8 566 83.6
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 1.0e-273 946.4 565 85.1
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.0e-273 944.9 561 84.3
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 3.9e-273 944.5 550 84.0
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 5.1e-273 944.1 562 83.3
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.5e-272 942.6 549 84.0
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 1.9e-272 942.2 597 80.1
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 2.5e-272 941.8 563 82.9
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 3.3e-272 941.4 549 83.8
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.3e-272 941.0 561 83.8
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 4.3e-272 941.0 537 86.8
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 7.3e-272 940.3 589 80.3
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 7.3e-272 940.3 561 83.8
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 9.6e-272 939.9 551 83.5
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 1.6e-271 939.1 588 79.6
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 1.6e-271 939.1 550 83.8
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 2.8e-271 938.3 573 82.2
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 3.6e-271 937.9 549 84.2
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 4.7e-271 937.6 548 83.6
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 4.7e-271 937.6 558 82.4
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 6.2e-271 937.2 540 85.2
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 1.8e-270 935.6 554 83.9
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 9.0e-270 933.3 558 82.4
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 2.6e-269 931.8 548 83.0
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 3.4e-269 931.4 551 82.4
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 4.4e-269 931.0 547 84.1
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 9.9e-269 929.9 536 86.6
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.7e-268 929.1 558 82.8
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.9e-268 928.3 579 80.7
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 3.8e-268 927.9 564 82.8
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.9e-268 927.5 555 83.2
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 8.4e-268 926.8 560 82.0
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 1.4e-267 926.0 591 78.2
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 4.2e-267 924.5 556 81.5
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 5.4e-267 924.1 590 78.8
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 1.6e-266 922.5 558 81.4
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 2.1e-266 922.2 556 81.1
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.7e-266 921.8 569 81.2
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 2.7e-266 921.8 564 82.1
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.7e-265 919.1 563 82.1
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.3e-265 918.7 557 82.6
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.9e-264 915.6 527 86.1
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 4.3e-264 914.4 576 82.3
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 1.6e-263 912.5 589 77.8
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.6e-263 912.5 561 81.1
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 2.4e-262 908.7 630 76.0
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 5.8e-261 904.0 560 81.8
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 4.2e-259 897.9 549 80.7
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 1.2e-258 896.3 619 74.6
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 4.6e-258 894.4 562 79.2
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 4.6e-258 894.4 580 77.2
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.9e-256 889.0 564 78.9
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 8.1e-255 883.6 591 76.5
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.4e-254 882.1 556 77.3
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.9e-252 875.2 550 77.8
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.4e-251 872.8 464 93.1
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.9e-251 872.5 530 83.2
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.3e-249 866.3 530 82.6
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.9e-249 864.8 547 79.5
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 3.9e-249 864.8 546 78.0
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.9e-248 862.4 653 69.5
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 4.3e-248 861.3 557 79.2
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 9.6e-248 860.1 557 79.2
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.1e-247 859.0 591 75.3
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 3.2e-243 845.1 479 86.2
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 5.7e-240 834.3 486 85.0
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.5e-237 824.7 575 75.7
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.7e-236 822.8 549 76.5
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.5e-232 809.7 553 72.3
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 1.5e-229 799.7 559 74.2
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 3.8e-228 795.0 540 72.6
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 5.7e-224 781.2 532 72.0
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 4.8e-223 778.1 541 70.8
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.6e-221 772.3 453 83.7
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 7.7e-221 770.8 565 68.5
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.1e-216 756.9 523 78.0
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 2.9e-212 742.3 544 71.1
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 4.7e-210 734.9 405 91.6
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.3e-207 726.9 553 68.7
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 4.7e-186 655.2 538 61.0
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 4.3e-163 578.9 410 74.4
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 9.6e-163 577.8 341 85.3
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 3.6e-162 575.9 510 58.6
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 3.1e-161 572.8 554 58.7
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.9e-158 563.5 546 54.8
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 3.2e-158 562.8 356 80.6
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 4.6e-133 479.2 555 49.0
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 1.2e-128 464.5 257 89.5
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 3.2e-94 350.1 249 69.9
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 4.8e-90 336.3 188 81.9
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 9.2e-73 278.9 373 46.9
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 3.3e-70 270.4 208 65.4
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 6.6e-55 219.5 198 57.1
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.1e-46 192.2 116 81.9
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 6.8e-44 183.0 153 65.4
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 1.9e-41 174.9 112 76.8
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 9.6e-38 162.5 102 78.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.6e-37 160.6 118 63.6
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.3e-31 142.1 314 32.8
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 5.3e-28 130.2 312 34.3
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 4.9e-26 123.6 73 86.3
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 2.9e-18 97.8 58 81.0
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 3.8e-18 97.4 57 78.9
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.1e-14 85.9 110 48.2
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 6.3e-13 80.1 126 42.1
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.4e-12 79.0 42 81.0
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 1.8e-12 78.6 107 45.8
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 5.3e-12 77.0 46 71.7
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 3.8e-10 70.9 87 48.3
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 3.2e-09 67.8 52 73.1
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 7.2e-09 66.6 42 73.8
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 1.6e-08 65.5 36 75.0
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 2.3e-07 61.6 37 81.1
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 3.3e-06 57.8 112 37.5
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 5.7e-06 57.0 55 56.4


User provided reference genes

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