Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G337.6 Capsicum annuum HOM05D003857 ORTHO05D004454 4.6e-53 211.1 114 100.0
Solyc07g065460.1 Solanum lycopersicum HOM05D003857 ORTHO05D004454 2.3e-36 155.6 115 74.8
Sopen07g033670 Solanum pennellii HOM05D003857 ORTHO05D004454 1.5e-35 152.9 115 73.9
PGSC0003DMG400022174 Solanum tuberosum HOM05D003857 ORTHO05D004454 3.3e-35 151.8 115 75.7
Nitab4.5_0000461g0260 Nicotiana tabacum HOM05D003857 ORTHO05D004454 3.9e-28 128.3 111 71.2
Nitab4.5_0006886g0010 Nicotiana tabacum HOM05D003857 ORTHO05D004454 4.3e-27 124.8 101 72.3
Cc05_g14870 Coffea canephora HOM05D003857 ORTHO05D004454 7.8e-21 104.0 101 60.4
Oeu014353.1 Olea europaea HOM05D003857 ORTHO05D004454 1.5e-19 99.8 98 60.2
SalBow8G3453 Salvia bowleyana HOM05D003857 ORTHO05D004454 1.1e-17 93.6 98 56.1
MSTRG.13018 Avicennia marina HOM05D003857 ORTHO05D004454 1.8e-17 92.8 102 52.9
HanXRQChr05g0161821 Helianthus annuus HOM05D003857 ORTHO05D004454 2.4e-17 92.4 86 58.1
Rhsim06G0228800 Rhododendron simsii HOM05D003857 ORTHO05D004454 5.3e-17 91.3 86 61.6
TAR629G0922 Trochodendron aralioides HOM05D003857 ORTHO05D004454 5.3e-17 91.3 86 57.0
Nn1g07497 Nelumbo nucifera HOM05D003857 ORTHO05D004454 2.0e-16 89.4 83 57.8
vmacro22708 Vaccinium macrocarpon HOM05D003857 ORTHO05D004454 7.6e-16 87.4 82 59.8
EL10Ac4g07592 Beta vulgaris HOM05D003857 ORTHO05D004454 1.3e-15 86.7 86 55.8
GSVIVG01003487001 Vitis vinifera HOM05D003857 ORTHO05D004454 2.2e-15 85.9 86 46.5
Manes.15G060900 Manihot esculenta HOM05D003857 ORTHO05D004454 2.9e-15 85.5 95 48.4
Migut.H01760 Erythranthe guttata HOM05D003857 ORTHO05D004454 3.8e-15 85.1 83 59.0
CANSAT11G1184 Cannabis sativa HOM05D003857 ORTHO05D004454 4.9e-15 84.7 86 58.1
AUR62036444 Chenopodium quinoa HOM05D003857 ORTHO05D004454 4.9e-15 84.7 91 51.6
Atru.chr2.3676 Acer truncatum HOM05D003857 ORTHO05D004454 6.4e-15 84.3 87 57.5
Hma1.2p1_0889F.1_g232820 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 8.4e-15 84.0 87 57.5
QL08p004432 Quercus lobata HOM05D003857 ORTHO05D004454 1.9e-14 82.8 86 53.5
QL08p004552 Quercus lobata HOM05D003857 ORTHO05D004454 1.9e-14 82.8 86 53.5
FvH4_3g29390 Fragaria vesca HOM05D003857 ORTHO05D004454 4.2e-14 81.6 96 47.9
FAN16G1576 Fragaria x ananassa HOM05D003857 ORTHO05D004454 4.2e-14 81.6 96 47.9
FAN25G1727 Fragaria x ananassa HOM05D003857 ORTHO05D004454 4.2e-14 81.6 96 47.9
Oeu041436.1 Olea europaea HOM05D003857 ORTHO05D004454 4.2e-14 81.6 101 50.5
Aqoxy1G04245 Aquilegia oxysepala HOM05D003857 ORTHO05D004454 5.4e-14 81.3 107 47.7
MSTRG.14482 Avicennia marina HOM05D003857 ORTHO05D004454 5.4e-14 81.3 84 54.8
Sc03g0011180 Simmondsia chinensis HOM05D003857 ORTHO05D004454 5.4e-14 81.3 83 57.8
FAN21G0934 Fragaria x ananassa HOM05D003857 ORTHO05D004454 7.1e-14 80.9 96 46.9
Hund01891 Selenicereus undatus HOM05D003857 ORTHO05D004454 7.1e-14 80.9 96 52.1
MD03G1183900 Malus domestica HOM05D003857 ORTHO05D004454 9.3e-14 80.5 105 45.7
Actinidia05015 Actinidia chinensis HOM05D003857 ORTHO05D004454 2.7e-13 79.0 87 56.3
AUR62017087 Chenopodium quinoa HOM05D003857 ORTHO05D004454 3.5e-13 78.6 84 50.0
SGA_v2.0_scaffold42G15994 Striga asiatica HOM05D003857 ORTHO05D004454 3.5e-13 78.6 114 50.0
FAN11G0618 Fragaria x ananassa HOM05D003857 ORTHO05D004454 4.6e-13 78.2 101 46.5
SGA_v2.0_scaffold8G04405 Striga asiatica HOM05D003857 ORTHO05D004454 4.6e-13 78.2 84 53.6
COL.COLO4_09818 Corchorus olitorius HOM05D003857 ORTHO05D004454 6.0e-13 77.8 96 47.9
PGR083G2342 Punica granatum HOM05D003857 ORTHO05D004454 6.0e-13 77.8 113 44.2
MD11G1200800 Malus domestica HOM05D003857 ORTHO05D004454 7.9e-13 77.4 105 43.8
Manes.03G140433 Manihot esculenta HOM05D003857 ORTHO05D004454 7.9e-13 77.4 89 50.6
Manes.03G140500 Manihot esculenta HOM05D003857 ORTHO05D004454 7.9e-13 77.4 89 50.6
Prupe.4G242100 Prunus persica HOM05D003857 ORTHO05D004454 1.0e-12 77.0 92 50.0
Sc21g0003640 Simmondsia chinensis HOM05D003857 ORTHO05D004454 1.3e-12 76.6 83 54.2
Ciclev10009964m.g Citrus clementina HOM05D003857 ORTHO05D004454 1.8e-12 76.3 83 54.2
RcHm_v2.0_Chr5g0053811 Rosa chinensis HOM05D003857 ORTHO05D004454 3.0e-12 75.5 87 51.7
Thecc.07G015100 Theobroma cacao HOM05D003857 ORTHO05D004454 3.0e-12 75.5 96 47.9
DCAR_002236 Daucus carota HOM05D003857 ORTHO05D004454 5.1e-12 74.7 86 46.5
Glyma.15G117900 Glycine max HOM05D003857 ORTHO05D004454 5.1e-12 74.7 97 42.3
Potri.001G366900 Populus trichocarpa HOM05D003857 ORTHO05D004454 6.7e-12 74.3 91 45.1
TWI38G0553 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 1.5e-11 73.2 87 49.4
DCAR_030845 Daucus carota HOM05D003857 ORTHO05D004454 1.9e-11 72.8 86 46.5
TPR.G10580 Trifolium pratense HOM05D003857 ORTHO05D004454 3.3e-11 72.0 86 41.9
Gohir.D01G076300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 4.3e-11 71.6 87 49.4
Gorai.002G099500 Gossypium raimondii HOM05D003857 ORTHO05D004454 4.3e-11 71.6 87 49.4
Haze_09813 Corylus avellana HOM05D003857 ORTHO05D004454 5.6e-11 71.2 90 50.0
Gohir.A01G091000 Gossypium hirsutum HOM05D003857 ORTHO05D004454 5.6e-11 71.2 87 49.4
MBI16_g22432_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 5.6e-11 71.2 84 44.0
Lalb_Chr15g0088131 Lupinus albus HOM05D003857 ORTHO05D004454 7.4e-11 70.9 88 39.8
C01p26490 Brassica napus HOM05D003857 ORTHO05D004454 1.3e-10 70.1 87 43.7
Gohir.A13G133501 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.3e-10 70.1 92 45.7
Gohir.D13G136800 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.3e-10 70.1 92 45.7
Gorai.013G153300 Gossypium raimondii HOM05D003857 ORTHO05D004454 1.3e-10 70.1 92 45.7
Sabra16G0240200 Salix brachista HOM05D003857 ORTHO05D004454 1.3e-10 70.1 91 44.0
Glyma.09G013000 Glycine max HOM05D003857 ORTHO05D004454 1.6e-10 69.7 97 39.2
Cc09_g00510 Coffea canephora HOM05D003857 ORTHO05D004454 2.1e-10 69.3 87 44.8
RcHm_v2.0_Chr5g0000661 Rosa chinensis HOM05D003857 ORTHO05D004454 2.1e-10 69.3 86 41.9
Haze_07004 Corylus avellana HOM05D003857 ORTHO05D004454 2.8e-10 68.9 91 40.7
PSO210G4960 Papaver somniferum HOM05D003857 ORTHO05D004454 3.6e-10 68.6 92 47.8
MD00G1056900 Malus domestica HOM05D003857 ORTHO05D004454 4.8e-10 68.2 86 40.7
Rhsim04G0013000 Rhododendron simsii HOM05D003857 ORTHO05D004454 4.8e-10 68.2 84 53.6
Thecc.06G238500 Theobroma cacao HOM05D003857 ORTHO05D004454 4.8e-10 68.2 86 39.5
arahy.Tifrunner.gnm1.ann1.J6PND3 Arachis hypogaea HOM05D003857 ORTHO05D004454 8.1e-10 67.4 107 36.4
BolC1t02594H Brassica oleracea HOM05D003857 ORTHO05D004454 8.1e-10 67.4 87 42.5
ClCG01G010960 Citrullus lanatus HOM05D003857 ORTHO05D004454 8.1e-10 67.4 86 43.0
CiPaw.12G137500 Carya illinoinensis HOM05D003857 ORTHO05D004454 1.4e-09 66.6 96 40.6
Nn1g03204 Nelumbo nucifera HOM05D003857 ORTHO05D004454 1.4e-09 66.6 84 48.8
Ciclev10017306m.g Citrus clementina HOM05D003857 ORTHO05D004454 1.8e-09 66.2 83 38.6
MELO3C026073.2 Cucumis melo HOM05D003857 ORTHO05D004454 1.8e-09 66.2 86 40.7
PSO210G1156 Papaver somniferum HOM05D003857 ORTHO05D004454 1.8e-09 66.2 92 45.7
CsaV3_3G004060 Cucumis sativus L. HOM05D003857 ORTHO05D004454 2.4e-09 65.9 88 47.7
Prupe.4G005500 Prunus persica HOM05D003857 ORTHO05D004454 2.4e-09 65.9 85 41.2
arahy.Tifrunner.gnm1.ann1.A9XG53 Arachis hypogaea HOM05D003857 ORTHO05D004454 3.1e-09 65.5 90 37.8
Sp7g14930 Schrenkiella parvula HOM05D003857 ORTHO05D004454 3.1e-09 65.5 87 42.5
BraA08t33236Z Brassica rapa HOM05D003857 ORTHO05D004454 4.0e-09 65.1 87 41.4
Cpa.g.c35467.2 Carica papaya HOM05D003857 ORTHO05D004454 4.0e-09 65.1 97 39.2
C01p51910 Brassica napus HOM05D003857 ORTHO05D004454 5.3e-09 64.7 95 43.2
BraA01t02029Z Brassica rapa HOM05D003857 ORTHO05D004454 5.3e-09 64.7 87 41.4
ClCG10G004230 Citrullus lanatus HOM05D003857 ORTHO05D004454 5.3e-09 64.7 86 46.5
ClCG10G004260 Citrullus lanatus HOM05D003857 ORTHO05D004454 5.3e-09 64.7 86 46.5
Gohir.A06G156300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 5.3e-09 64.7 82 42.7
BcaNung00200 Brassica carinata HOM05D003857 ORTHO05D004454 6.9e-09 64.3 87 40.2
A01p21200 Brassica napus HOM05D003857 ORTHO05D004454 6.9e-09 64.3 87 40.2
A08p12220 Brassica napus HOM05D003857 ORTHO05D004454 6.9e-09 64.3 87 41.4
BolC1t05138H Brassica oleracea HOM05D003857 ORTHO05D004454 6.9e-09 64.3 95 43.2
CARHR087760 Cardamine hirsuta HOM05D003857 ORTHO05D004454 6.9e-09 64.3 95 44.2
AL3G24920 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 9.0e-09 63.9 97 42.3
BraA01t04072Z Brassica rapa HOM05D003857 ORTHO05D004454 9.0e-09 63.9 96 42.7
Rhsim13G0142200 Rhododendron simsii HOM05D003857 ORTHO05D004454 9.0e-09 63.9 87 41.4
Hma1.2p1_0036F.1_g022470 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 1.2e-08 63.5 57 61.4
Atru.chr1.2307 Acer truncatum HOM05D003857 ORTHO05D004454 1.5e-08 63.2 86 40.7
Duzib192G0644 Durio zibethinus HOM05D003857 ORTHO05D004454 1.5e-08 63.2 94 38.3
FvH4_3g00490 Fragaria vesca HOM05D003857 ORTHO05D004454 1.5e-08 63.2 87 40.2
Glyma.18G078100 Glycine max HOM05D003857 ORTHO05D004454 1.5e-08 63.2 94 43.6
Potri.006G017900 Populus trichocarpa HOM05D003857 ORTHO05D004454 1.5e-08 63.2 96 36.5
BcaC07g37984 Brassica carinata HOM05D003857 ORTHO05D004454 2.0e-08 62.8 84 40.5
A01p40370 Brassica napus HOM05D003857 ORTHO05D004454 2.0e-08 62.8 95 43.2
BolC8t48365H Brassica oleracea HOM05D003857 ORTHO05D004454 2.0e-08 62.8 84 40.5
Sabra06G0013000 Salix brachista HOM05D003857 ORTHO05D004454 2.0e-08 62.8 96 38.5
A03p49780 Brassica napus HOM05D003857 ORTHO05D004454 2.6e-08 62.4 87 40.2
BraA03t14073Z Brassica rapa HOM05D003857 ORTHO05D004454 2.6e-08 62.4 87 40.2
Carub.0003s1252 Capsella rubella HOM05D003857 ORTHO05D004454 2.6e-08 62.4 96 42.7
Glyma.07G267300 Glycine max HOM05D003857 ORTHO05D004454 2.6e-08 62.4 88 38.6
Lj4g0009185 Lotus japonicus HOM05D003857 ORTHO05D004454 2.6e-08 62.4 87 36.8
C07p47840 Brassica napus HOM05D003857 ORTHO05D004454 3.4e-08 62.0 87 40.2
BolC7t45306H Brassica oleracea HOM05D003857 ORTHO05D004454 3.4e-08 62.0 87 40.2
Thhalv10022264m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 3.4e-08 62.0 95 44.2
Phvul.003G085900 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 3.4e-08 62.0 85 38.8
Phvul.006G140400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 3.4e-08 62.0 86 39.5
AT3G13175 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 4.5e-08 61.6 97 43.3
Thhalv10027070m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 4.5e-08 61.6 87 40.2
AT4G16400 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 7.6e-08 60.8 95 33.7
BolC5t34151H Brassica oleracea HOM05D003857 ORTHO05D004454 7.6e-08 60.8 94 42.6
CiPaw.09G107600 Carya illinoinensis HOM05D003857 ORTHO05D004454 7.6e-08 60.8 81 38.3
Gohir.D06G162600 Gossypium hirsutum HOM05D003857 ORTHO05D004454 7.6e-08 60.8 82 40.2
Gorai.010G189800 Gossypium raimondii HOM05D003857 ORTHO05D004454 7.6e-08 60.8 82 40.2
Sed0020326 Sechium edule HOM05D003857 ORTHO05D004454 7.6e-08 60.8 84 41.7
FAN25G3265 Fragaria x ananassa HOM05D003857 ORTHO05D004454 9.9e-08 60.5 87 39.1
MBI19_g22178_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 9.9e-08 60.5 65 49.2
CsaV3_1G015520 Cucumis sativus L. HOM05D003857 ORTHO05D004454 1.3e-07 60.1 86 37.2
Actinidia35399 Actinidia chinensis HOM05D003857 ORTHO05D004454 1.7e-07 59.7 61 49.2
Manes.08G070300 Manihot esculenta HOM05D003857 ORTHO05D004454 1.7e-07 59.7 99 34.3
Phvul.006G056400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.7e-07 59.7 93 44.1
Sed0010782 Sechium edule HOM05D003857 ORTHO05D004454 1.7e-07 59.7 83 45.8
Glyma.08G328700 Glycine max HOM05D003857 ORTHO05D004454 2.2e-07 59.3 84 45.2
Potri.016G007101 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.2e-07 59.3 86 37.2
THA.LOC104810291 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 2.2e-07 59.3 99 42.4
arahy.Tifrunner.gnm1.ann1.QWC3QU Arachis hypogaea HOM05D003857 ORTHO05D004454 2.9e-07 58.9 92 43.5
arahy.Tifrunner.gnm1.ann1.Y3WDI1 Arachis hypogaea HOM05D003857 ORTHO05D004454 2.9e-07 58.9 92 43.5
Carub.0007s2513 Capsella rubella HOM05D003857 ORTHO05D004454 2.9e-07 58.9 84 35.7
Sabra16G0011900 Salix brachista HOM05D003857 ORTHO05D004454 2.9e-07 58.9 86 33.7
THA.LOC104815698 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 2.9e-07 58.9 99 44.4
BcaB06g25481 Brassica carinata HOM05D003857 ORTHO05D004454 3.8e-07 58.5 95 41.1
BcaC05g29205 Brassica carinata HOM05D003857 ORTHO05D004454 4.9e-07 58.2 95 41.1
A05p36390 Brassica napus HOM05D003857 ORTHO05D004454 4.9e-07 58.2 95 41.1
C05p54780 Brassica napus HOM05D003857 ORTHO05D004454 4.9e-07 58.2 95 41.1
BraA05t22439Z Brassica rapa HOM05D003857 ORTHO05D004454 4.9e-07 58.2 95 41.1
AL7G38610 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 6.4e-07 57.8 87 34.5
BcaC09g50339 Brassica carinata HOM05D003857 ORTHO05D004454 8.4e-07 57.4 57 49.1
Migut.H01624 Erythranthe guttata HOM05D003857 ORTHO05D004454 1.1e-06 57.0 86 37.2
Aa31LG2G12460 Aethionema arabicum HOM05D003857 ORTHO05D004454 1.9e-06 56.2 85 36.5
Sp3g11350 Schrenkiella parvula HOM05D003857 ORTHO05D004454 4.2e-06 55.1 95 41.1
Phvul.008G278500 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 5.5e-06 54.7 93 40.9
Aa31LG8G380 Aethionema arabicum HOM05D003857 ORTHO05D004454 9.3e-06 53.9 95 36.8
COL.COLO4_31924 Corchorus olitorius HOM05D003857 ORTHO05D004454 9.3e-06 53.9 102 35.3


User provided reference genes

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