Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G337.44 Capsicum annuum HOM05D001848 ORTHO05D001295 1.3e-46 189.5 104 100.0
Sopen07g033320 Solanum pennellii HOM05D001848 ORTHO05D001295 5.8e-31 137.5 98 70.4
Solyc07g065110.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.3e-30 136.3 104 68.3
PGSC0003DMG400022295 Solanum tuberosum HOM05D001848 ORTHO05D001295 1.1e-29 133.3 105 68.6
Nitab4.5_0004362g0040 Nicotiana tabacum HOM05D001848 ORTHO05D001295 8.7e-27 123.6 98 66.3
Nitab4.5_0001160g0120 Nicotiana tabacum HOM05D001848 ORTHO05D001295 3.7e-25 118.2 98 67.3
Peaxi162Scf00235g00085 Petunia axillaris HOM05D001848 ORTHO05D001295 3.1e-24 115.2 104 59.6
Migut.H01781 Erythranthe guttata HOM05D001848 ORTHO05D001295 2.2e-17 92.4 104 43.3
Oeu019626.1 Olea europaea HOM05D001848 ORTHO05D001295 8.2e-17 90.5 103 46.6
Lsat_1_v5_gn_7_113461 Lactuca sativa HOM05D001848 ORTHO05D001295 3.8e-14 81.6 106 36.8
ECA236G2606 Erigeron canadensis HOM05D001848 ORTHO05D001295 8.5e-14 80.5 97 38.1
DCAR_017099 Daucus carota HOM05D001848 ORTHO05D001295 2.5e-13 79.0 100 40.0
Eucgr.F03514 Eucalyptus grandis HOM05D001848 ORTHO05D001295 3.2e-13 78.6 103 41.7
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 1.2e-12 76.6 95 41.1
Nn1g07396 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.6e-12 76.3 104 42.3
TAR627G0109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 2.1e-12 75.9 103 39.8
TAR627G0750 Trochodendron aralioides HOM05D001848 ORTHO05D001295 2.1e-12 75.9 103 39.8
DCAR_013205 Daucus carota HOM05D001848 ORTHO05D001295 2.7e-12 75.5 93 36.6
TAR626G1904 Trochodendron aralioides HOM05D001848 ORTHO05D001295 2.7e-12 75.5 72 45.8
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 7.9e-12 73.9 94 41.5
CARHR268760 Cardamine hirsuta HOM05D008197 ORTHO05D001295 3.0e-11 72.0 100 41.0
CANSAT11G0228 Cannabis sativa HOM05D001848 ORTHO05D001295 3.9e-11 71.6 103 34.0
CANSAT25G2839 Cannabis sativa HOM05D001848 ORTHO05D001295 3.9e-11 71.6 103 34.0
CANSAT54G2121 Cannabis sativa HOM05D001848 ORTHO05D001295 3.9e-11 71.6 103 34.0
CANSAT64G2475 Cannabis sativa HOM05D001848 ORTHO05D001295 3.9e-11 71.6 103 34.0
CiPaw.11G196700 Carya illinoinensis HOM05D001848 ORTHO05D001295 3.9e-11 71.6 103 35.0
CARHR268750 Cardamine hirsuta HOM05D008197 ORTHO05D001295 8.8e-11 70.5 104 36.5
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 8.8e-11 70.5 89 37.1
Cpa.g.sc12.222 Carica papaya HOM05D001848 ORTHO05D001295 1.5e-10 69.7 88 39.8
COL.COLO4_09753 Corchorus olitorius HOM05D001848 ORTHO05D001295 2.0e-10 69.3 81 38.3
Medtr3g055250 Medicago truncatula HOM05D001848 ORTHO05D001295 2.0e-10 69.3 97 37.1
PGR031G3783 Punica granatum HOM05D001848 ORTHO05D001295 2.0e-10 69.3 79 40.5
A03p14070 Brassica napus HOM05D008197 ORTHO05D001295 4.3e-10 68.2 105 38.1
C03p16510 Brassica napus HOM05D008197 ORTHO05D001295 4.3e-10 68.2 105 37.1
BolC3t14070H Brassica oleracea HOM05D008197 ORTHO05D001295 4.3e-10 68.2 105 37.1
BraA03t10707Z Brassica rapa HOM05D008197 ORTHO05D001295 4.3e-10 68.2 105 38.1
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 4.3e-10 68.2 102 38.2
Thhalv10015912m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 5.7e-10 67.8 105 39.0
TPR.G23577 Trifolium pratense HOM05D001848 ORTHO05D001295 5.7e-10 67.8 99 33.3
MBI07_g42482_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 7.4e-10 67.4 100 36.0
Carub.0008s1579 Capsella rubella HOM05D008197 ORTHO05D001295 9.7e-10 67.0 97 38.1
MBI07_g13964_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 9.7e-10 67.0 92 37.0
Glyma.07G141500 Glycine max HOM05D001848 ORTHO05D001295 2.2e-09 65.9 104 34.6
RcHm_v2.0_Chr5g0056191 Rosa chinensis HOM05D001848 ORTHO05D001295 2.2e-09 65.9 97 36.1
Sp6g17330 Schrenkiella parvula HOM05D008197 ORTHO05D001295 2.2e-09 65.9 105 37.1
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 2.2e-09 65.9 102 38.2
BcaB01g04342 Brassica carinata HOM05D008197 ORTHO05D001295 2.8e-09 65.5 105 34.3
Carub.0008s1575 Capsella rubella HOM05D008197 ORTHO05D001295 3.7e-09 65.1 105 37.1
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 3.7e-09 65.1 96 34.4
LjContig00272g0007655 Lotus japonicus HOM05D001848 ORTHO05D001295 3.7e-09 65.1 103 35.9
LjContig00272g0023351 Lotus japonicus HOM05D001848 ORTHO05D001295 3.7e-09 65.1 103 35.9
Lalb_Chr00c48g0412851 Lupinus albus HOM05D001848 ORTHO05D001295 3.7e-09 65.1 103 36.9
Lalb_Chr00c48g0413061 Lupinus albus HOM05D001848 ORTHO05D001295 3.7e-09 65.1 103 36.9
Lalb_Chr04g0248081 Lupinus albus HOM05D001848 ORTHO05D001295 3.7e-09 65.1 103 36.9
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 3.7e-09 65.1 102 37.3
AT5G55450 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 4.8e-09 64.7 101 38.6
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 6.3e-09 64.3 96 33.3
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 6.3e-09 64.3 94 40.4
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 8.2e-09 63.9 106 32.1
ATR0712G087 Amborella trichopoda HOM05D001848 ORTHO05D001295 8.2e-09 63.9 79 38.0
Gorai.011G140500 Gossypium raimondii HOM05D001848 ORTHO05D001295 8.2e-09 63.9 106 40.6
BcaC07g41668 Brassica carinata HOM05D008197 ORTHO05D001295 1.1e-08 63.5 77 39.0
Carub.0008s1578 Capsella rubella HOM05D008197 ORTHO05D001295 1.1e-08 63.5 101 35.6
FAN22G1308 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.1e-08 63.5 104 32.7
Nn7g37661 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.1e-08 63.5 98 34.7
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 1.4e-08 63.2 94 38.3
Nn1g07985 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.8e-08 62.8 105 33.3
Nn1g08247 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.8e-08 62.8 105 33.3
FAN07G0789 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.4e-08 62.4 98 33.7
Glyma.07G141300 Glycine max HOM05D001848 ORTHO05D001295 2.4e-08 62.4 104 36.5
Glyma.18G191800 Glycine max HOM05D001848 ORTHO05D001295 2.4e-08 62.4 104 37.5
Gorai.N003400 Gossypium raimondii HOM05D001848 ORTHO05D001295 2.4e-08 62.4 93 33.3
Medtr5g094210 Medicago truncatula HOM05D001848 ORTHO05D001295 2.4e-08 62.4 96 37.5
AT5G55410 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 3.1e-08 62.0 105 38.1
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 3.1e-08 62.0 97 37.1
FvH4_4g11910 Fragaria vesca HOM05D001848 ORTHO05D001295 3.1e-08 62.0 98 33.7
FAN17G1858 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.1e-08 62.0 98 33.7
AL8G30990 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 4.1e-08 61.6 101 35.6
CANSAT11G0405 Cannabis sativa HOM05D001848 ORTHO05D001295 4.1e-08 61.6 97 36.1
FAN12G2359 Fragaria x ananassa HOM05D001848 ORTHO05D001295 4.1e-08 61.6 98 33.7
TPR.G30652 Trifolium pratense HOM05D001848 ORTHO05D001295 4.1e-08 61.6 104 33.7
AL8G30960 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 5.3e-08 61.2 105 35.2
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 5.3e-08 61.2 93 35.5
Glyma.18G191600 Glycine max HOM05D001848 ORTHO05D001295 5.3e-08 61.2 104 37.5
QL09p046203 Quercus lobata HOM05D001848 ORTHO05D001295 5.3e-08 61.2 92 34.8
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 6.9e-08 60.8 96 37.5
CARHR268770 Cardamine hirsuta HOM05D008197 ORTHO05D001295 9.1e-08 60.5 101 34.7
MELO3C013103.2 Cucumis melo HOM05D001848 ORTHO05D001295 9.1e-08 60.5 94 36.2
HPP92_013640 Vanilla planifolia HOM05D001848 ORTHO05D001295 9.1e-08 60.5 101 39.6
Atru.chr12.2390 Acer truncatum HOM05D001848 ORTHO05D001295 1.2e-07 60.1 106 33.0
RcHm_v2.0_Chr4g0409461 Rosa chinensis HOM05D001848 ORTHO05D001295 1.2e-07 60.1 98 32.7
THA.LOC104817694 Tarenaya hassleriana HOM05D008197 ORTHO05D001295 1.2e-07 60.1 95 36.8
DCAR_021418 Daucus carota HOM05D001848 ORTHO05D001295 2.6e-07 58.9 95 33.7
FAN22G1115 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.6e-07 58.9 98 33.7
A02p09680 Brassica napus HOM05D008197 ORTHO05D001295 3.4e-07 58.5 104 33.7
C02p16150 Brassica napus HOM05D008197 ORTHO05D001295 3.4e-07 58.5 104 33.7
BolC2t07720H Brassica oleracea HOM05D008197 ORTHO05D001295 3.4e-07 58.5 104 33.7
HanXRQChr10g0307341 Helianthus annuus HOM05D001848 ORTHO05D001295 3.4e-07 58.5 91 36.3
Lj3g0013447 Lotus japonicus HOM05D001848 ORTHO05D001295 3.4e-07 58.5 99 34.3
Aqoxy2G03960 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 4.5e-07 58.2 111 32.4
arahy.Tifrunner.gnm1.ann1.04HYJ8 Arachis hypogaea HOM05D001848 ORTHO05D001295 4.5e-07 58.2 100 30.0
BraA02t06032Z Brassica rapa HOM05D008197 ORTHO05D001295 4.5e-07 58.2 104 33.7
ClCG09G020940 Citrullus lanatus HOM05D001848 ORTHO05D001295 4.5e-07 58.2 103 32.0
MD05G1159700 Malus domestica HOM05D001848 ORTHO05D001295 4.5e-07 58.2 100 34.0
Aa31LG3G11410 Aethionema arabicum HOM05D008197 ORTHO05D001295 5.9e-07 57.8 104 32.7
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 5.9e-07 57.8 107 31.8
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 7.7e-07 57.4 94 34.0
DCAR_021416 Daucus carota HOM05D001848 ORTHO05D001295 7.7e-07 57.4 96 33.3
FvH4_4g11920 Fragaria vesca HOM05D001848 ORTHO05D001295 7.7e-07 57.4 98 32.7
FAN12G1139 Fragaria x ananassa HOM05D001848 ORTHO05D001295 7.7e-07 57.4 98 32.7
FAN12G1690 Fragaria x ananassa HOM05D001848 ORTHO05D001295 7.7e-07 57.4 98 32.7
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 7.7e-07 57.4 100 33.0
Phvul.008G112900 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 7.7e-07 57.4 96 35.4
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 7.7e-07 57.4 91 34.1
FAN07G2298 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.0e-06 57.0 98 32.7
Glyma.08G324100 Glycine max HOM05D001848 ORTHO05D001295 1.0e-06 57.0 90 34.4
Phvul.006G050100 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 1.0e-06 57.0 90 33.3
AT5G48485 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 1.3e-06 56.6 96 33.3
Lsat_1_v5_gn_5_118320 Lactuca sativa HOM05D001848 ORTHO05D001295 1.3e-06 56.6 93 40.9
Psat2g010560 Pisum sativum HOM05D001848 ORTHO05D001295 1.3e-06 56.6 104 31.7
VMungo1383G1433 Vigna mungo HOM05D001848 ORTHO05D001295 1.3e-06 56.6 104 34.6
Atru.chr6.3548 Acer truncatum HOM05D001848 ORTHO05D001295 1.7e-06 56.2 93 34.4
AL8G21340 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 1.7e-06 56.2 105 30.5
C02p16090 Brassica napus HOM05D008197 ORTHO05D001295 1.7e-06 56.2 96 36.5
BolC2t07718H Brassica oleracea HOM05D008197 ORTHO05D001295 1.7e-06 56.2 96 36.5
Ca_06356_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 1.7e-06 56.2 103 35.9
CsaV3_7G018810 Cucumis sativus L. HOM05D001848 ORTHO05D001295 1.7e-06 56.2 98 37.8
Lj6g0007816 Lotus japonicus HOM05D001848 ORTHO05D001295 1.7e-06 56.2 97 34.0
Carub.0003s1868 Capsella rubella HOM05D012125 ORTHO05D001295 2.2e-06 55.8 90 36.7
PSO017G5175 Papaver somniferum HOM05D001848 ORTHO05D001295 2.2e-06 55.8 97 32.0
VMungo0540G1563 Vigna mungo HOM05D001848 ORTHO05D001295 2.2e-06 55.8 90 32.2
Aqoxy1G04063 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 2.9e-06 55.5 104 31.7
AL8G21350 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 2.9e-06 55.5 103 32.0
Glyma.11G120400 Glycine max HOM05D001848 ORTHO05D001295 2.9e-06 55.5 84 34.5
Gohir.D07G167100 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.9e-06 55.5 88 30.7
Sc08g0000310 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.9e-06 55.5 98 34.7
AT5G48490 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 3.8e-06 55.1 103 31.1
arahy.Tifrunner.gnm1.ann1.8S64Z0 Arachis hypogaea HOM05D001848 ORTHO05D001295 3.8e-06 55.1 96 29.2
BcaC01g06365 Brassica carinata HOM05D008197 ORTHO05D001295 5.0e-06 54.7 96 33.3
Duzib133G1037 Durio zibethinus HOM05D001848 ORTHO05D001295 5.0e-06 54.7 93 31.2
arahy.Tifrunner.gnm1.ann1.545QT9 Arachis hypogaea HOM05D001848 ORTHO05D001295 6.5e-06 54.3 95 28.4
BcaB07g30026 Brassica carinata HOM05D001848 ORTHO05D001295 6.5e-06 54.3 72 40.3
Ciclev10029642m.g Citrus clementina HOM05D001848 ORTHO05D001295 6.5e-06 54.3 98 34.7
Eucgr.H00727 Eucalyptus grandis HOM05D001848 ORTHO05D001295 6.5e-06 54.3 76 38.2
TPR.G30659 Trifolium pratense HOM05D001848 ORTHO05D001295 6.5e-06 54.3 96 34.4
A02p09660 Brassica napus HOM05D008197 ORTHO05D001295 8.5e-06 53.9 96 35.4
BraA02t06030Z Brassica rapa HOM05D008197 ORTHO05D001295 8.5e-06 53.9 96 35.4
Thhalv10021820m.g Eutrema salsugineum HOM05D012125 ORTHO05D001295 8.5e-06 53.9 93 35.5


User provided reference genes

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