Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.6e-28 128.6 62 100.0
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.3e-25 119.0 62 91.9
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.2e-20 102.4 60 76.7
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 6.2e-20 100.1 61 75.4
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.1e-19 97.8 62 74.2
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.2e-19 97.1 61 72.1
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.2e-18 95.9 60 73.3
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 2.0e-18 95.1 61 67.2
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.0e-18 95.1 61 72.1
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 2.6e-18 94.7 62 71.0
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.6e-18 94.7 61 70.5
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 3.4e-18 94.4 62 67.7
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 7.5e-18 93.2 61 70.5
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 9.8e-18 92.8 62 71.0
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 9.8e-18 92.8 62 71.0
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 9.8e-18 92.8 62 71.0
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 9.8e-18 92.8 62 71.0
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 9.8e-18 92.8 61 70.5
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 9.8e-18 92.8 61 70.5
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 9.8e-18 92.8 60 70.0
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 9.8e-18 92.8 60 66.7
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 1.3e-17 92.4 62 71.0
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 1.3e-17 92.4 62 71.0
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.7e-17 92.0 62 71.0
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.7e-17 92.0 62 71.0
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.7e-17 92.0 62 67.7
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.7e-17 92.0 60 65.0
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.7e-17 90.9 62 69.4
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 4.9e-17 90.5 62 69.4
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 4.9e-17 90.5 60 66.7
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 6.4e-17 90.1 62 69.4
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 6.4e-17 90.1 62 69.4
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 6.4e-17 90.1 60 63.3
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 8.3e-17 89.7 62 67.7
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 8.3e-17 89.7 62 67.7
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 8.3e-17 89.7 62 67.7
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.9e-16 88.6 58 70.7
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 3.2e-16 87.8 60 63.3
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 4.1e-16 87.4 58 70.7
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 5.4e-16 87.0 60 63.3
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 5.4e-16 87.0 60 68.3
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 7.0e-16 86.7 60 63.3
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 7.0e-16 86.7 57 70.2
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 9.2e-16 86.3 61 65.6
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 2.0e-15 85.1 61 65.6
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.3e-14 82.4 60 60.0
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.3e-14 82.4 60 60.0
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 1.7e-14 82.0 60 60.0
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.7e-14 82.0 61 65.6
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 1.7e-14 82.0 60 56.7
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 6.6e-14 80.1 61 59.0
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.5e-13 79.0 54 63.0
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 1.5e-13 79.0 60 55.0
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 1.5e-13 79.0 60 55.0
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 1.5e-13 79.0 60 55.0
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 1.9e-13 78.6 60 58.3
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 1.9e-13 78.6 60 55.0
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 5.6e-13 77.0 50 68.0
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 5.6e-13 77.0 60 56.7
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 7.3e-13 76.6 62 58.1
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 1.6e-12 75.5 62 56.5
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 2.1e-12 75.1 60 55.0
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 4.7e-12 73.9 57 59.6
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 4.7e-12 73.9 60 55.0
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 1.4e-11 72.4 62 51.6
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 1.8e-11 72.0 60 53.3
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 4.0e-11 70.9 57 57.9
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 6.8e-11 70.1 57 56.1
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 8.9e-11 69.7 60 50.0
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 1.5e-10 68.9 53 58.5
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 2.0e-10 68.6 53 60.4
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 2.0e-10 68.6 60 53.3
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 2.6e-10 68.2 57 57.9
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 4.4e-10 67.4 46 65.2
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 4.4e-10 67.4 57 56.1
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 5.8e-10 67.0 57 56.1
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 5.8e-10 67.0 57 57.9
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 9.8e-10 66.2 60 50.0
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 9.8e-10 66.2 61 54.1
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.3e-09 65.9 46 67.4
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 2.9e-09 64.7 53 56.6
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 4.9e-09 63.9 57 54.4
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 6.4e-09 63.5 57 50.9
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 8.3e-09 63.2 56 53.6
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 1.1e-08 62.8 48 58.3
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.4e-08 62.4 56 55.4
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 56.6
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 54.7
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 50.9
CARHR049680 Cardamine hirsuta HOM05D007252 ORTHO05D009074 4.1e-08 60.8 44 63.6
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 4.1e-08 60.8 57 52.6
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 5.4e-08 60.5 56 51.8
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 7.1e-08 60.1 53 50.9
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 9.2e-08 59.7 56 53.6
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 9.2e-08 59.7 56 53.6
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 1.2e-07 59.3 40 70.0
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 1.2e-07 59.3 47 59.6
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 2.7e-07 58.2 56 51.8
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 2.7e-07 58.2 56 51.8
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 6.0e-07 57.0 56 51.8
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 6.0e-07 57.0 57 49.1
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 6.0e-07 57.0 60 41.7
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 1.0e-06 56.2 56 44.6
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 1.7e-06 55.5 57 45.6
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.7e-06 55.5 57 45.6
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.9e-06 54.3 57 43.9
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.9e-06 54.3 57 43.9
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 3.9e-06 54.3 57 45.6
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 5.1e-06 53.9 57 47.4


User provided reference genes

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