Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 9.1e-78 293.5 148 100.0
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 5.3e-70 267.7 168 82.1
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 1.5e-69 266.2 168 81.0
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 2.6e-69 265.4 168 81.0
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 1.2e-56 223.4 197 66.0
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 1.7e-52 209.5 113 88.5
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 1.1e-51 206.8 169 65.7
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 3.2e-51 205.3 140 73.6
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 3.6e-50 201.8 188 59.0
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 3.6e-50 201.8 188 59.0
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 8.0e-50 200.7 178 61.2
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 1.0e-49 200.3 178 60.7
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 2.3e-49 199.1 178 61.2
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 3.0e-49 198.7 186 57.5
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 5.2e-49 198.0 180 59.4
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 1.5e-48 196.4 183 59.6
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 1.5e-48 196.4 170 61.8
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 3.4e-48 195.3 190 57.4
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 3.4e-48 195.3 178 61.2
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 5.7e-48 194.5 179 57.0
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 7.5e-48 194.1 187 57.8
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 9.8e-48 193.7 185 56.2
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 1.7e-47 193.0 186 56.5
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 2.8e-47 192.2 186 55.9
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 2.8e-47 192.2 187 57.8
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 3.7e-47 191.8 183 59.0
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 4.8e-47 191.4 189 55.6
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 4.8e-47 191.4 175 61.1
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 6.3e-47 191.0 186 57.0
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 6.3e-47 191.0 186 57.0
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 8.3e-47 190.7 187 55.6
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 1.1e-46 190.3 186 55.4
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 1.1e-46 190.3 184 56.0
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 1.4e-46 189.9 185 57.3
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 2.4e-46 189.1 185 55.7
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 2.4e-46 189.1 178 60.1
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 4.1e-46 188.3 188 56.9
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 4.1e-46 188.3 174 57.5
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 5.4e-46 188.0 174 57.5
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 9.1e-46 187.2 184 57.1
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 9.1e-46 187.2 183 55.2
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 1.2e-45 186.8 189 55.0
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 1.6e-45 186.4 195 53.8
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 1.6e-45 186.4 190 55.3
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 2.0e-45 186.0 184 57.1
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 2.7e-45 185.7 186 55.4
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 4.5e-45 184.9 184 55.4
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 4.5e-45 184.9 180 56.7
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 5.9e-45 184.5 184 57.1
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 5.9e-45 184.5 184 55.4
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 1.3e-44 183.3 185 53.5
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 1.3e-44 183.3 183 55.7
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 2.3e-44 182.6 189 54.5
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 2.3e-44 182.6 186 54.8
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 2.3e-44 182.6 188 54.3
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 2.3e-44 182.6 186 53.2
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 2.9e-44 182.2 187 54.5
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 3.8e-44 181.8 188 53.7
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 3.8e-44 181.8 184 52.7
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 5.0e-44 181.4 183 54.6
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 8.6e-44 180.6 184 56.0
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 1.5e-43 179.9 200 51.5
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 1.5e-43 179.9 184 54.3
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 1.5e-43 179.9 184 54.9
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 1.9e-43 179.5 183 55.2
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 2.5e-43 179.1 197 52.3
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 2.5e-43 179.1 179 55.9
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 2.5e-43 179.1 179 55.9
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 2.5e-43 179.1 184 55.4
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 2.5e-43 179.1 187 53.5
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 3.3e-43 178.7 179 55.9
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 4.2e-43 178.3 185 52.4
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 5.5e-43 177.9 184 52.7
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 7.2e-43 177.6 114 74.6
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 9.5e-43 177.2 225 47.6
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 9.5e-43 177.2 113 73.5
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 1.8e-41 172.9 137 66.4
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.5e-40 169.9 183 54.1
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 3.4e-40 168.7 172 55.8
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 1.3e-39 166.8 105 73.3
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 1.7e-39 166.4 105 73.3
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 2.2e-39 166.0 181 50.8
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 2.8e-39 165.6 182 53.8
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 6.3e-39 164.5 230 43.9
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 1.1e-38 163.7 105 73.3
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 5.4e-38 161.4 139 59.7
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 5.4e-38 161.4 151 58.3
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 4.5e-37 158.3 111 67.6
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 5.0e-36 154.8 116 67.2
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 6.6e-36 154.5 93 73.1
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 9.5e-35 150.6 173 53.2
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 9.5e-35 150.6 201 47.3
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 1.2e-34 150.2 139 60.4
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 1.6e-34 149.8 105 70.5
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.6e-34 149.8 137 62.0
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 2.3e-33 146.0 146 53.4
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 1.7e-31 139.8 189 46.6
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 3.7e-31 138.7 151 53.6
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 4.9e-31 138.3 82 74.4
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 4.1e-30 135.2 74 77.0
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 7.0e-30 134.4 185 45.9
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 7.0e-30 134.4 131 53.4
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 2.0e-29 132.9 187 44.9
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 1.3e-28 130.2 112 63.4
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.2e-26 123.6 90 68.9
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 3.4e-24 115.5 196 40.8
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 1.9e-22 109.8 135 54.1
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 1.2e-18 97.1 168 39.3
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 1.6e-18 96.7 147 40.1
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.1e-12 75.1 122 45.9
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.1e-12 75.1 122 45.9
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 1.3e-07 60.5 45 62.2
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 1.7e-07 60.1 111 43.2
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 9.2e-06 54.3 88 43.2


User provided reference genes

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