Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.4e-122 442.2 230 100.0
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.9e-113 410.6 230 91.7
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 4.8e-110 401.4 230 89.1
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 6.3e-110 401.0 230 89.6
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 8.2e-110 400.6 228 89.0
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 4.1e-109 398.3 230 89.6
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.0e-107 393.7 228 88.2
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 8.5e-99 364.0 220 83.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.5e-95 353.2 229 77.3
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 3.3e-95 352.1 227 76.2
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 9.7e-95 350.5 227 78.0
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.7e-94 349.7 227 75.3
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.8e-94 348.2 228 76.3
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 4.8e-94 348.2 222 77.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 8.2e-94 347.4 228 76.3
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 8.2e-94 347.4 227 76.7
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 8.2e-94 347.4 227 77.5
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.4e-93 346.7 228 76.8
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.8e-93 346.3 227 76.2
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.4e-93 345.9 227 75.8
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 4.1e-93 345.1 228 75.0
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 7.0e-93 344.4 228 75.9
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 9.1e-93 344.0 227 75.3
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.2e-92 343.6 228 75.9
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 2.0e-92 342.8 228 73.2
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.6e-92 342.4 228 75.9
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.5e-92 341.7 230 74.8
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 5.9e-92 341.3 228 73.2
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.3e-91 340.1 222 76.1
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.3e-91 340.1 229 75.1
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.7e-91 339.7 229 75.1
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.7e-91 339.7 228 74.6
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.7e-91 339.7 224 74.6
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.2e-91 339.3 228 73.7
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.2e-91 339.3 228 72.4
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.9e-91 339.0 222 77.5
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.8e-91 338.6 222 76.1
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 6.5e-91 337.8 226 73.0
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 8.5e-91 337.4 227 74.0
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.1e-90 337.0 227 74.4
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.1e-90 337.0 224 75.4
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 3.2e-90 335.5 224 72.8
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.2e-90 335.1 227 74.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 5.5e-90 334.7 227 73.1
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 7.2e-90 334.3 227 73.1
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 7.2e-90 334.3 219 77.2
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.2e-89 333.6 228 71.9
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.2e-89 333.6 226 74.8
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.7e-89 332.4 229 73.8
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 2.7e-89 332.4 227 70.9
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 3.6e-89 332.0 228 71.1
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 3.6e-89 332.0 229 72.1
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 4.7e-89 331.6 222 74.3
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 4.7e-89 331.6 227 70.0
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 6.1e-89 331.3 227 73.6
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 6.1e-89 331.3 227 73.1
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.0e-88 330.5 228 72.4
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.8e-88 329.7 228 71.9
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 1.8e-88 329.7 227 72.7
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.3e-88 329.3 217 74.7
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 3.9e-88 328.6 228 70.2
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 5.2e-88 328.2 227 70.5
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 6.7e-88 327.8 227 71.8
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 6.7e-88 327.8 226 73.5
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 6.7e-88 327.8 227 70.0
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 6.7e-88 327.8 228 70.2
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-87 327.0 227 73.1
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 2.0e-87 326.2 228 71.5
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 2.6e-87 325.9 228 71.9
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-87 325.5 227 70.9
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 7.4e-87 324.3 226 72.6
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 9.7e-87 323.9 229 71.2
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 9.7e-87 323.9 227 72.2
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-86 323.6 227 71.4
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.3e-86 323.6 227 71.4
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.3e-86 323.6 227 71.4
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.3e-86 323.6 226 73.5
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.2e-86 322.8 265 62.6
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.8e-86 322.4 224 72.8
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 3.7e-86 322.0 227 70.9
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 3.7e-86 322.0 227 71.4
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.7e-86 322.0 229 69.9
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 4.8e-86 321.6 226 70.8
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 6.3e-86 321.2 227 70.9
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 6.3e-86 321.2 224 71.4
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.2e-86 320.9 227 72.2
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.1e-85 320.5 225 72.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.1e-85 320.5 225 71.6
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.6e-84 316.6 227 69.6
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.6e-84 316.6 227 69.6
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 2.0e-84 316.2 227 69.6
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 2.0e-84 316.2 215 72.6
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 2.0e-84 316.2 228 65.8
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.5e-84 315.5 227 68.7
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 3.5e-84 315.5 227 69.2
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.5e-84 315.5 228 70.2
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 4.5e-84 315.1 217 72.8
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.5e-84 315.1 227 69.6
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 5.9e-84 314.7 215 72.1
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 7.7e-84 314.3 215 71.6
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.7e-84 314.3 222 69.8
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.3e-83 313.5 227 68.3
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.2e-83 312.8 212 72.6
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 2.2e-83 312.8 229 69.0
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 3.8e-83 312.0 215 71.2
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.8e-83 312.0 201 76.6
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.9e-82 309.7 215 70.7
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.5e-82 309.3 227 68.3
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 3.2e-82 308.9 227 68.3
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.2e-82 307.8 215 71.2
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.6e-81 306.6 215 70.7
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.5e-79 300.1 212 69.8
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 3.3e-79 298.9 204 73.0
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 4.4e-79 298.5 224 67.0
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.3e-78 297.0 309 51.5
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 4.8e-78 295.0 228 61.4
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 6.3e-78 294.7 192 77.1
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.7e-76 287.7 227 66.1
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.3e-75 287.0 212 68.4
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.9e-75 285.8 210 70.5
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 2.5e-74 282.7 190 73.2
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.2e-74 282.3 208 65.4
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 9.4e-74 280.8 207 69.6
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 3.6e-73 278.9 217 65.9
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 8.0e-73 277.7 230 63.0
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.4e-71 272.3 219 63.5
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 7.0e-69 264.6 195 68.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.8e-67 258.8 179 71.5
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.0e-64 250.8 182 70.3
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 5.7e-63 245.0 237 56.5
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 4.1e-61 238.8 210 58.6
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 4.5e-60 235.3 147 76.9
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.3e-59 233.0 222 56.3
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 8.6e-59 231.1 211 58.3
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 3.3e-58 229.2 211 55.9
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 3.6e-57 225.7 209 55.5
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.5e-55 220.3 133 80.5
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-55 219.5 144 74.3
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.5e-50 203.8 124 81.5
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 6.2e-49 198.4 144 68.8
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 3.7e-46 189.1 171 59.6
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 2.3e-43 179.9 142 65.5
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 2.8e-41 172.9 134 63.4
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 5.2e-40 168.7 119 68.9
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 6.8e-40 168.3 99 93.9
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 6.8e-40 168.3 135 60.7
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.3e-38 164.1 129 61.2
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.3e-38 164.1 143 54.5
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 4.9e-38 162.2 146 58.2
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 8.3e-38 161.4 202 43.6
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.3e-35 154.1 185 45.9
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.3e-35 154.1 98 78.6
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.5e-34 150.6 197 45.2
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-34 150.2 126 61.1
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 9.5e-34 147.9 85 82.4
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 4.7e-33 145.6 85 88.2
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 6.8e-32 141.7 108 68.5
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.6e-31 139.8 132 56.1
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 4.4e-31 139.0 77 92.2
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 5.8e-31 138.7 85 80.0
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 8.4e-30 134.8 88 75.0
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.1e-29 134.4 100 70.0
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.4e-29 134.0 85 75.3
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.6e-28 130.6 82 80.5
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 6.6e-27 125.2 95 69.5
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 4.3e-26 122.5 124 52.4
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 9.6e-26 121.3 105 61.0
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.8e-25 119.8 85 71.8
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-24 117.9 85 70.6
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 9.0e-24 114.8 76 75.0
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 3.8e-22 109.4 74 70.3
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.1e-21 107.8 125 48.0
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.9e-18 97.1 102 53.9
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.4e-16 90.9 61 68.9
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-15 87.0 84 57.1
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 5.8e-15 85.5 51 74.5
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 8.4e-14 81.6 70 58.6
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 8.4e-14 81.6 204 28.9
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 4.6e-12 75.9 67 58.2
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 4.6e-12 75.9 219 28.3
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.3e-11 73.6 187 28.3
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 8.7e-11 71.6 60 60.0
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 7.4e-10 68.6 49 65.3


User provided reference genes

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