Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G337.10 Capsicum annuum HOM05D002518 ORTHO05D002630 8.3e-71 270.4 149 100.0
CAN.G2764.1 Capsicum annuum HOM05D002518 ORTHO05D002630 9.5e-35 150.6 146 67.8
PGSC0003DMG401023504 Solanum tuberosum HOM05D002518 ORTHO05D002630 6.0e-29 131.3 135 57.0
Solyc05g054930.3 Solanum lycopersicum HOM05D002518 ORTHO05D002630 5.1e-28 128.3 135 55.6
Sopen05g033390 Solanum pennellii HOM05D002518 ORTHO05D002630 9.6e-27 124.0 135 54.8
CAN.G1465.17 Capsicum annuum HOM05D002518 ORTHO05D002630 2.4e-25 119.4 135 54.1
Peaxi162Scf00015g00273 Petunia axillaris HOM05D002518 ORTHO05D002630 3.8e-23 112.1 137 49.6
Nitab4.5_0003965g0010 Nicotiana tabacum HOM05D002518 ORTHO05D002630 1.3e-18 97.1 115 51.3
CAN.G710.67 Capsicum annuum HOM05D002518 ORTHO05D002630 1.2e-16 90.5 70 67.1
CAN.G486.4 Capsicum annuum HOM05D002518 ORTHO05D002630 4.5e-16 88.6 70 65.7
CAN.G1703.7 Capsicum annuum HOM05D002518 ORTHO05D002630 5.8e-16 88.2 65 70.8
CAN.G5118.1 Capsicum annuum HOM05D002518 ORTHO05D002630 2.9e-15 85.9 70 62.9
CAN.G1563.4 Capsicum annuum HOM05D002518 ORTHO05D002630 8.4e-15 84.3 70 61.4
Dinv25940 Davidia involucrata HOM05D002518 ORTHO05D002630 8.4e-15 84.3 150 38.7
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-14 84.0 65 69.2
TAR633G0496 Trochodendron aralioides HOM05D002518 ORTHO05D002630 1.9e-14 83.2 161 36.0
TAR633G1082 Trochodendron aralioides HOM05D002518 ORTHO05D002630 1.9e-14 83.2 161 36.0
CAN.G1669.9 Capsicum annuum HOM05D002518 ORTHO05D002630 2.4e-14 82.8 70 61.4
CAN.G2070.1 Capsicum annuum HOM05D002518 ORTHO05D002630 2.4e-14 82.8 65 66.2
Prupe.2G222100 Prunus persica HOM05D002518 ORTHO05D002630 2.4e-14 82.8 155 38.7
Rhsim03G0121000 Rhododendron simsii HOM05D002518 ORTHO05D002630 2.4e-14 82.8 153 36.6
Atru.chr12.601 Acer truncatum HOM05D002518 ORTHO05D002630 3.2e-14 82.4 152 38.8
CAN.G1579.2 Capsicum annuum HOM05D002518 ORTHO05D002630 3.2e-14 82.4 65 69.2
Migut.F01537 Erythranthe guttata HOM05D002518 ORTHO05D002630 7.1e-14 81.3 142 38.7
Hma1.2p1_0207F.1_g088000 Hydrangea macrophylla HOM05D002518 ORTHO05D002630 7.1e-14 81.3 150 35.3
MSTRG.313 Avicennia marina HOM05D002518 ORTHO05D002630 9.3e-14 80.9 149 36.2
CAN.G575.111 Capsicum annuum HOM05D002518 ORTHO05D002630 9.3e-14 80.9 65 67.7
Actinidia03008 Actinidia chinensis HOM05D002518 ORTHO05D002630 1.2e-13 80.5 153 35.3
CAN.G134.143 Capsicum annuum HOM05D002518 ORTHO05D002630 1.2e-13 80.5 65 66.2
TAR633G1707 Trochodendron aralioides HOM05D002518 ORTHO05D002630 1.2e-13 80.5 154 37.7
CAN.G309.105 Capsicum annuum HOM05D002518 ORTHO05D002630 1.6e-13 80.1 65 67.7
MD07G1183400 Malus domestica HOM05D002518 ORTHO05D002630 2.1e-13 79.7 156 37.2
CAN.G309.108 Capsicum annuum HOM05D002518 ORTHO05D002630 2.7e-13 79.3 65 66.2
Lj8A93T66 Lonicera japonica HOM05D002518 ORTHO05D002630 2.7e-13 79.3 143 39.2
CAN.G2802.1 Capsicum annuum HOM05D002496 ORTHO05D002787 3.5e-13 79.0 65 66.2
Oeu058329.1 Olea europaea HOM05D002518 ORTHO05D002630 3.5e-13 79.0 70 55.7
RcHm_v2.0_Chr1g0364701 Rosa chinensis HOM05D002518 ORTHO05D002630 3.5e-13 79.0 155 36.1
CSS0011254 Camellia sinensis var. sinensis HOM05D002518 ORTHO05D002630 6.0e-13 78.2 152 35.5
DCAR_031727 Daucus carota HOM05D002518 ORTHO05D002630 6.0e-13 78.2 133 38.3
Gohir.A10G208600 Gossypium hirsutum HOM05D002518 ORTHO05D002630 6.0e-13 78.2 150 37.3
Gohir.D10G216901 Gossypium hirsutum HOM05D002518 ORTHO05D002630 6.0e-13 78.2 153 36.6
Gorai.011G242500 Gossypium raimondii HOM05D002518 ORTHO05D002630 6.0e-13 78.2 153 36.6
Manes.10G039900 Manihot esculenta HOM05D002518 ORTHO05D002630 6.0e-13 78.2 151 38.4
Oeu050634.1 Olea europaea HOM05D002518 ORTHO05D002630 6.0e-13 78.2 70 54.3
CSS0012201 Camellia sinensis var. sinensis HOM05D002518 ORTHO05D002630 7.9e-13 77.8 152 35.5
CiPaw.01G279100 Carya illinoinensis HOM05D002518 ORTHO05D002630 1.0e-12 77.4 70 57.1
MSTRG.8231 Avicennia marina HOM05D002518 ORTHO05D002630 1.3e-12 77.0 138 40.6
CAN.G1353.19 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-12 77.0 65 63.1
DCAR_015261 Daucus carota HOM05D002518 ORTHO05D002630 1.3e-12 77.0 151 35.1
Sc06g0001850 Simmondsia chinensis HOM05D002518 ORTHO05D002630 1.3e-12 77.0 151 35.1
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 1.8e-12 76.6 85 55.3
COL.COLO4_06777 Corchorus olitorius HOM05D002518 ORTHO05D002630 1.8e-12 76.6 70 54.3
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 1.8e-12 76.6 70 54.3
CAN.G1579.3 Capsicum annuum HOM05D002518 ORTHO05D002630 2.3e-12 76.3 65 64.6
CAN.G2026.3 Capsicum annuum HOM05D002518 ORTHO05D002630 3.0e-12 75.9 65 64.6
CAN.G309.119 Capsicum annuum HOM05D002518 ORTHO05D002630 3.0e-12 75.9 65 64.6
Cc02_g08710 Coffea canephora HOM05D002518 ORTHO05D002630 3.0e-12 75.9 132 40.9
Cpa.g.sc10.58 Carica papaya HOM05D002518 ORTHO05D002630 5.1e-12 75.1 70 55.7
MBI13_g32814_MAGBIO Magnolia biondii HOM05D002518 ORTHO05D002630 5.1e-12 75.1 133 36.1
SGA_v2.0_scaffold8G04439 Striga asiatica HOM05D002518 ORTHO05D002630 5.1e-12 75.1 149 36.9
Haze_16965 Corylus avellana HOM05D002518 ORTHO05D002630 6.7e-12 74.7 69 52.2
FvH4_7g20660 Fragaria vesca HOM05D002518 ORTHO05D002630 6.7e-12 74.7 135 37.8
FAN03G2748 Fragaria x ananassa HOM05D002518 ORTHO05D002630 6.7e-12 74.7 135 37.8
FAN06G4611 Fragaria x ananassa HOM05D002518 ORTHO05D002630 6.7e-12 74.7 135 37.8
Lsat_1_v5_gn_2_115260 Lactuca sativa HOM05D002518 ORTHO05D002630 6.7e-12 74.7 139 38.1
Cfa001564 Carpinus fangiana HOM05D002518 ORTHO05D002630 1.1e-11 73.9 69 50.7
Ciclev10030639m.g Citrus clementina HOM05D002518 ORTHO05D002630 1.5e-11 73.6 156 36.5
Nitab4.5_0000914g0070 Nicotiana tabacum HOM05D002518 ORTHO05D002630 1.5e-11 73.6 167 35.3
Thecc.10G063600 Theobroma cacao HOM05D002518 ORTHO05D002630 1.5e-11 73.6 154 34.4
HanXRQChr07g0200471 Helianthus annuus HOM05D002518 ORTHO05D002630 1.9e-11 73.2 138 38.4
QL08p057433 Quercus lobata HOM05D002518 ORTHO05D002630 1.9e-11 73.2 143 37.8
vmacro07106 Vaccinium macrocarpon HOM05D002518 ORTHO05D002630 1.9e-11 73.2 153 34.0
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-11 72.8 64 62.5
EL10Ac2g03516 Beta vulgaris HOM05D002518 ORTHO05D002630 3.3e-11 72.4 155 34.2
CAN.G309.97 Capsicum annuum HOM05D002518 ORTHO05D002630 4.3e-11 72.0 65 60.0
Duzib128G0274 Durio zibethinus HOM05D002518 ORTHO05D002630 4.3e-11 72.0 143 38.5
Lj1A929T68 Lonicera japonica HOM05D002518 ORTHO05D002630 4.3e-11 72.0 142 33.8
Sabra08G0033400 Salix brachista HOM05D002518 ORTHO05D002630 4.3e-11 72.0 154 33.1
Hund19284 Selenicereus undatus HOM05D002518 ORTHO05D002630 4.3e-11 72.0 70 51.4
TWI63G1198 Tripterygium wilfordii HOM05D002518 ORTHO05D002630 4.3e-11 72.0 70 51.4
Manes.07G106100 Manihot esculenta HOM05D002518 ORTHO05D002630 5.6e-11 71.6 151 35.8
Potri.010G214300 Populus trichocarpa HOM05D002518 ORTHO05D002630 5.6e-11 71.6 156 33.3
Duzib114G0996 Durio zibethinus HOM05D002518 ORTHO05D002630 7.4e-11 71.2 153 35.3
Nn2g14619 Nelumbo nucifera HOM05D002518 ORTHO05D002630 7.4e-11 71.2 154 33.8
Actinidia38230 Actinidia chinensis HOM05D002518 ORTHO05D002630 9.6e-11 70.9 151 35.8
CDE09G0657 Ceratophyllum demersum HOM05D002518 ORTHO05D002630 9.6e-11 70.9 65 50.8
Sabra10G0165700 Salix brachista HOM05D002518 ORTHO05D002630 9.6e-11 70.9 153 32.0
HPP92_021170 Vanilla planifolia HOM05D002518 ORTHO05D002630 9.6e-11 70.9 69 52.2
Ah.10g033160 Amaranthus hybridus HOM05D002518 ORTHO05D002630 1.6e-10 70.1 154 32.5
Glyma.20G243000 Glycine max HOM05D002518 ORTHO05D002630 1.6e-10 70.1 75 50.7
HanXRQChr14g0460781 Helianthus annuus HOM05D002518 ORTHO05D002630 1.6e-10 70.1 70 48.6
Lalb_Chr06g0164081 Lupinus albus HOM05D002518 ORTHO05D002630 1.6e-10 70.1 155 33.5
GSVIVG01032635001 Vitis vinifera HOM05D002518 ORTHO05D002630 2.1e-10 69.7 142 35.9
Gorai.012G092100 Gossypium raimondii HOM05D002518 ORTHO05D002630 2.8e-10 69.3 134 35.8
Lalb_Chr02g0143821 Lupinus albus HOM05D002518 ORTHO05D002630 2.8e-10 69.3 134 38.1
PSO063G6194 Papaver somniferum HOM05D002518 ORTHO05D002630 2.8e-10 69.3 70 47.1
Ca_11341_v3 Cicer arietinum L. HOM05D002518 ORTHO05D002630 3.7e-10 68.9 133 36.8
Ca_30327_v3 Cicer arietinum L. HOM05D002518 ORTHO05D002630 3.7e-10 68.9 133 36.8
Phvul.007G007200 Phaseolus vulgaris HOM05D002518 ORTHO05D002630 3.7e-10 68.9 74 51.4
SHI28186 Sapria himalayana HOM05D002518 ORTHO05D002630 3.7e-10 68.9 131 35.9
unitig_749.g14015 Utricularia gibba HOM05D002518 ORTHO05D002630 3.7e-10 68.9 139 36.7
CANSAT35G0792 Cannabis sativa HOM05D002518 ORTHO05D002630 4.8e-10 68.6 154 34.4
CAN.G2026.6 Capsicum annuum HOM05D002518 ORTHO05D002630 4.8e-10 68.6 70 58.6
Gohir.D04G081600 Gossypium hirsutum HOM05D002518 ORTHO05D002630 4.8e-10 68.6 154 33.1
PSO017G1865 Papaver somniferum HOM05D002518 ORTHO05D002630 4.8e-10 68.6 70 47.1
ECA238G0038 Erigeron canadensis HOM05D002518 ORTHO05D002630 6.2e-10 68.2 138 35.5
CDE08G0209 Ceratophyllum demersum HOM05D002518 ORTHO05D002630 8.1e-10 67.8 65 49.2
Aqoxy7G03758 Aquilegia oxysepala HOM05D002518 ORTHO05D002630 1.1e-09 67.4 134 35.1
Medtr1g116070 Medicago truncatula HOM05D002518 ORTHO05D002630 1.1e-09 67.4 69 50.7
Potri.008G047200 Populus trichocarpa HOM05D002518 ORTHO05D002630 1.1e-09 67.4 156 34.6
Glyma.10G292800 Glycine max HOM05D002518 ORTHO05D002630 1.4e-09 67.0 75 49.3
Gohir.D06G173800 Gossypium hirsutum HOM05D002518 ORTHO05D002630 1.4e-09 67.0 134 37.3
Gohir.A05G343300 Gossypium hirsutum HOM05D002518 ORTHO05D002630 1.8e-09 66.6 154 33.1
Lj1C927T17 Lonicera japonica HOM05D002518 ORTHO05D002630 1.8e-09 66.6 98 40.8
VMungo0720G1865 Vigna mungo HOM05D002518 ORTHO05D002630 1.8e-09 66.6 74 50.0
TWI15G0312 Tripterygium wilfordii HOM05D002518 ORTHO05D002630 2.4e-09 66.2 70 48.6
Gorai.010G203400 Gossypium raimondii HOM05D002518 ORTHO05D002630 4.0e-09 65.5 134 36.6
TPR.G10394 Trifolium pratense HOM05D002518 ORTHO05D002630 4.0e-09 65.5 69 47.8
Zm00001eb399780 Zea mays HOM05D002518 ORTHO05D002630 5.3e-09 65.1 128 34.4
ClCG09G020340 Citrullus lanatus HOM05D002518 ORTHO05D002630 6.9e-09 64.7 70 47.1
THA.LOC104825243 Tarenaya hassleriana HOM05D002518 ORTHO05D002630 9.0e-09 64.3 153 32.7
MELO3C025489.2 Cucumis melo HOM05D002518 ORTHO05D002630 1.2e-08 63.9 70 47.1
Thhalv10010113m.g Eutrema salsugineum HOM05D002518 ORTHO05D002630 1.5e-08 63.5 65 50.8
Thhalv10016225m.g Eutrema salsugineum HOM05D002518 ORTHO05D002630 1.5e-08 63.5 138 32.6
ClCG02G013700 Citrullus lanatus HOM05D002518 ORTHO05D002630 2.0e-08 63.2 65 47.7
THA.LOC104809994 Tarenaya hassleriana HOM05D002518 ORTHO05D002630 2.0e-08 63.2 129 37.2
EL10Ac3g07389 Beta vulgaris HOM05D002518 ORTHO05D002630 2.6e-08 62.8 70 40.0
CAN.G792.5 Capsicum annuum HOM05D002518 ORTHO05D002630 4.5e-08 62.0 63 58.7
BcaC08g44721 Brassica carinata HOM05D002518 ORTHO05D002630 5.8e-08 61.6 136 33.8
C06p22590 Brassica napus HOM05D002518 ORTHO05D002630 5.8e-08 61.6 136 33.8
BolC6t37450H Brassica oleracea HOM05D002518 ORTHO05D002630 5.8e-08 61.6 136 33.8
CsaV3_5G026090 Cucumis sativus L. HOM05D002518 ORTHO05D002630 5.8e-08 61.6 70 45.7
Lj5g0003286 Lotus japonicus HOM05D002518 ORTHO05D002630 5.8e-08 61.6 69 44.9
Carub.0005s2169 Capsella rubella HOM05D002518 ORTHO05D002630 7.6e-08 61.2 128 37.5
ECA238G3961 Erigeron canadensis HOM05D002518 ORTHO05D002630 7.6e-08 61.2 67 46.3
Sed0009032 Sechium edule HOM05D002518 ORTHO05D002630 9.9e-08 60.8 70 57.1
CAN.G309.125 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-07 59.7 65 56.9
CAN.G6741.1 Capsicum annuum HOM05D002518 ORTHO05D002630 2.2e-07 59.7 63 57.1
Sp5g07360 Schrenkiella parvula HOM05D002518 ORTHO05D002630 2.2e-07 59.7 128 35.2
Sed0025529 Sechium edule HOM05D002518 ORTHO05D002630 2.2e-07 59.7 65 44.6
AT3G55060 Arabidopsis thaliana HOM05D002518 ORTHO05D002630 2.9e-07 59.3 127 34.6
A07p22420 Brassica napus HOM05D002518 ORTHO05D002630 2.9e-07 59.3 127 35.4
BraA07t29918Z Brassica rapa HOM05D002518 ORTHO05D002630 2.9e-07 59.3 127 35.4
FAN06G0455 Fragaria x ananassa HOM05D002518 ORTHO05D002630 2.9e-07 59.3 167 31.1
Zm00001eb399770 Zea mays HOM05D002518 ORTHO05D002630 3.8e-07 58.9 70 45.7
Aa31LG10G10080 Aethionema arabicum HOM05D002518 ORTHO05D002630 4.9e-07 58.5 65 46.2
AT2G39300 Arabidopsis thaliana HOM05D002518 ORTHO05D002630 4.9e-07 58.5 65 44.6
Os07g0686400 Oryza sativa ssp. japonica HOM05D002518 ORTHO05D002630 4.9e-07 58.5 133 30.8
BcaB02g07700 Brassica carinata HOM05D002518 ORTHO05D002630 6.4e-07 58.2 65 44.6
AL5G36180 Arabidopsis lyrata HOM05D002518 ORTHO05D002630 8.4e-07 57.8 127 33.9
A03p22020 Brassica napus HOM05D002518 ORTHO05D002630 8.4e-07 57.8 135 31.9
A05p07100 Brassica napus HOM05D002518 ORTHO05D002630 8.4e-07 57.8 125 32.0
BraA03t11437Z Brassica rapa HOM05D002518 ORTHO05D002630 1.1e-06 57.4 135 31.9
BraA05t19675Z Brassica rapa HOM05D002518 ORTHO05D002630 1.1e-06 57.4 125 31.2
CsaV3_5G006490 Cucumis sativus L. HOM05D002518 ORTHO05D002630 1.1e-06 57.4 65 43.1
SEGI_38280 Sequoiadendron giganteum HOM05D002518 ORTHO05D002630 1.1e-06 57.4 73 43.8
Aa31LG5G20280 Aethionema arabicum HOM05D002518 ORTHO05D002630 1.4e-06 57.0 65 47.7
FAN01G2220 Fragaria x ananassa HOM05D002518 ORTHO05D002630 1.4e-06 57.0 167 30.5
FAN01G2755 Fragaria x ananassa HOM05D002518 ORTHO05D002630 1.4e-06 57.0 167 30.5
FAN10G2555 Fragaria x ananassa HOM05D002518 ORTHO05D002630 1.4e-06 57.0 167 30.5
PSO063G5989 Papaver somniferum HOM05D002518 ORTHO05D002630 1.4e-06 57.0 124 31.5
PSO421G0235 Papaver somniferum HOM05D002518 ORTHO05D002630 1.9e-06 56.6 124 31.5
Ah.13g077540 Amaranthus hybridus HOM05D002518 ORTHO05D002630 2.4e-06 56.2 70 38.6
BcaB01g03601 Brassica carinata HOM05D002518 ORTHO05D002630 2.4e-06 56.2 133 30.1
MELO3C011711.2 Cucumis melo HOM05D002518 ORTHO05D002630 2.4e-06 56.2 65 43.1
BolC4t22447H Brassica oleracea HOM05D002518 ORTHO05D002630 3.2e-06 55.8 125 30.4
Carub.0004s2135 Capsella rubella HOM05D002518 ORTHO05D002630 3.2e-06 55.8 138 33.3
AUR62018473 Chenopodium quinoa HOM05D002518 ORTHO05D002630 3.2e-06 55.8 70 35.7
Sp4g21620 Schrenkiella parvula HOM05D002518 ORTHO05D002630 4.2e-06 55.5 132 32.6
SpUn0018_0050 Schrenkiella parvula HOM05D002518 ORTHO05D002630 4.2e-06 55.5 132 32.6
BcaB02g09136 Brassica carinata HOM05D002518 ORTHO05D002630 5.5e-06 55.1 125 30.4
ATR0307G086 Amborella trichopoda HOM05D002518 ORTHO05D002630 7.1e-06 54.7 156 27.6
BcaC02g12048 Brassica carinata HOM05D002518 ORTHO05D002630 7.1e-06 54.7 125 29.6
C04p08480 Brassica napus HOM05D002518 ORTHO05D002630 7.1e-06 54.7 125 29.6
AL4G36640 Arabidopsis lyrata HOM05D002518 ORTHO05D002630 9.3e-06 54.3 135 29.6
CARHR134050 Cardamine hirsuta HOM05D002518 ORTHO05D002630 9.3e-06 54.3 129 29.5


User provided reference genes

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