Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.6e-118 429.5 221 100.0
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 3.9e-101 371.7 222 87.8
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 1.1e-98 363.6 221 85.5
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 1.7e-96 356.3 225 84.0
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.0e-88 330.5 237 75.9
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 2.8e-67 259.2 208 64.4
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.2e-65 253.8 207 63.3
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.5e-65 252.3 202 64.9
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.5e-65 252.3 202 64.9
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 4.5e-65 251.9 206 64.1
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 5.0e-64 248.4 204 63.2
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.1e-63 247.3 206 64.1
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 9.4e-63 244.2 202 62.4
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 9.4e-63 244.2 217 62.7
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 9.4e-63 244.2 189 66.7
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.1e-62 243.0 206 63.1
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.7e-62 242.7 207 59.9
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 4.7e-62 241.9 207 60.4
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.4e-61 240.4 196 64.8
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.4e-61 240.4 207 59.9
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.8e-61 240.0 205 60.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.8e-61 240.0 208 61.1
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.0e-61 239.2 207 59.4
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 3.0e-61 239.2 203 60.6
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 4.0e-61 238.8 208 61.1
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 5.2e-61 238.4 222 56.3
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.0e-60 236.5 189 63.5
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.6e-60 236.1 201 61.2
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 2.6e-60 236.1 184 66.3
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 3.3e-60 235.7 207 59.4
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.3e-59 233.8 202 63.4
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 2.8e-59 232.6 204 61.3
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.7e-59 232.3 187 64.7
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 3.7e-59 232.3 205 59.5
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 8.2e-59 231.1 201 59.7
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 8.2e-59 231.1 205 59.0
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.1e-58 230.7 205 59.5
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.4e-58 229.6 205 60.5
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.7e-56 223.4 207 57.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.7e-56 223.4 194 61.3
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 5.0e-56 221.9 213 57.3
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.5e-55 220.3 191 58.1
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 2.5e-55 219.5 202 55.9
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 4.2e-55 218.8 198 58.6
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 4.2e-55 218.8 180 60.6
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 7.2e-55 218.0 207 57.5
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.2e-54 217.2 202 55.4
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.1e-54 216.5 203 60.1
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.3e-53 213.0 194 60.3
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 5.2e-53 211.8 212 53.8
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 6.8e-53 211.5 208 51.9
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 6.8e-53 211.5 212 53.3
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 8.8e-53 211.1 203 53.2
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.2e-52 210.7 198 55.6
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.5e-52 210.3 203 57.1
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 2.0e-52 209.9 216 52.8
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.6e-52 209.5 203 53.2
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.4e-52 209.1 203 56.2
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 4.4e-52 208.8 207 53.6
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 4.4e-52 208.8 207 53.6
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 5.7e-52 208.4 201 55.2
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 5.7e-52 208.4 197 54.8
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 9.8e-52 207.6 207 54.6
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.7e-51 206.8 193 52.8
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.2e-51 206.5 198 54.0
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 3.7e-51 205.7 206 52.9
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 8.3e-51 204.5 194 56.2
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.1e-50 204.1 188 54.3
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.4e-50 203.0 203 52.7
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 2.4e-50 203.0 202 54.0
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 3.1e-50 202.6 188 54.3
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 7.0e-50 201.4 210 53.3
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.2e-49 200.7 197 53.8
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.6e-49 200.3 204 52.5
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 4.5e-49 198.7 200 52.0
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 4.5e-49 198.7 200 52.0
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 5.9e-49 198.4 197 52.8
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 7.7e-49 198.0 197 52.8
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 7.7e-49 198.0 207 51.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.2e-48 196.4 212 50.0
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 5.0e-48 195.3 213 50.2
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 8.5e-48 194.5 196 50.5
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 1.5e-47 193.7 207 49.3
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 5.5e-47 191.8 210 49.0
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.4e-45 187.2 195 48.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 3.0e-45 186.0 197 48.7
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 8.8e-45 184.5 236 45.8
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.6e-44 183.0 169 56.8
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 3.4e-44 182.6 124 76.6
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 4.4e-44 182.2 236 45.3
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 5.7e-44 181.8 185 51.4
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 9.8e-44 181.0 206 46.1
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 6.3e-43 178.3 212 47.2
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.4e-42 177.2 188 48.9
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 2.4e-42 176.4 212 46.2
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 2.4e-42 176.4 212 46.2
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 3.1e-42 176.0 200 47.0
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 5.4e-42 175.3 212 46.7
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 7.0e-42 174.9 199 47.2
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.6e-41 173.7 193 51.3
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.6e-41 173.7 197 51.3
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.7e-41 172.9 204 48.0
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 4.5e-41 172.2 188 46.8
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 5.9e-41 171.8 188 47.3
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.9e-40 169.5 210 44.3
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 6.6e-40 168.3 134 62.7
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 6.6e-40 168.3 208 43.8
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 4.3e-39 165.6 188 46.3
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 5.6e-39 165.2 211 44.1
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 4.0e-37 159.1 129 61.2
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 3.4e-36 156.0 203 41.4
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 3.4e-36 156.0 217 45.2
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 7.5e-36 154.8 86 88.4
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 9.8e-36 154.5 204 43.1
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.2e-33 147.5 203 40.9
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.0e-32 142.9 124 60.5
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 9.5e-31 137.9 197 44.2
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.4e-29 134.0 202 41.1
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 4.0e-29 132.5 206 39.8
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 3.7e-27 125.9 204 35.3
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 3.7e-27 125.9 204 34.8
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 3.7e-27 125.9 204 35.3
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 8.3e-27 124.8 204 34.8
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 1.2e-25 120.9 72 83.3
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 1.2e-25 120.9 72 83.3
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 3.5e-25 119.4 72 84.7
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 3.0e-24 116.3 197 35.0
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 2.1e-22 110.2 179 30.7
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 3.6e-22 109.4 63 85.7
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 1.1e-21 107.8 62 87.1
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 1.4e-21 107.5 175 36.0
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.0e-20 103.6 197 32.5
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 1.7e-19 100.5 186 35.5
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 4.9e-19 99.0 184 32.6
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 8.3e-19 98.2 186 33.3
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.6e-17 94.0 179 35.8
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 6.0e-17 92.0 197 29.4
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 3.9e-16 89.4 183 32.2
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 9.5e-15 84.7 172 34.3
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 4.4e-12 75.9 86 41.9
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 7.1e-10 68.6 133 27.8
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 2.7e-09 66.6 99 32.3
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 7.8e-09 65.1 124 36.3
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 5.6e-07 58.9 41 61.0
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 7.3e-07 58.5 69 42.0
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 1.6e-06 57.4 114 27.2
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 4.7e-06 55.8 87 46.0


User provided reference genes

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