Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 7.4e-87 324.3 230 100.0
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 3.1e-77 292.4 230 70.9
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 9.4e-74 280.8 230 69.6
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 6.3e-62 241.5 230 62.2
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 1.1e-61 240.7 188 71.3
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 3.9e-51 205.7 239 66.1
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 2.0e-47 193.4 234 67.5
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 4.3e-42 175.6 239 46.0
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 1.2e-39 167.5 244 46.3
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 1.2e-39 167.5 248 45.6
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 4.4e-39 165.6 231 48.9
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 9.9e-39 164.5 234 45.3
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 7.1e-37 158.3 236 48.3
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 1.2e-36 157.5 242 43.8
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 4.6e-36 155.6 238 51.7
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 2.5e-34 149.8 234 43.6
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 5.6e-34 148.7 227 42.3
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 7.3e-34 148.3 236 45.3
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 4.7e-33 145.6 241 46.5
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 8.1e-33 144.8 227 43.6
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 1.8e-32 143.7 230 44.8
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 6.8e-32 141.7 232 44.8
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 6.8e-32 141.7 232 47.4
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 6.8e-32 141.7 227 53.7
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 3.4e-31 139.4 235 41.7
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 5.8e-31 138.7 223 43.5
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 7.6e-31 138.3 235 50.2
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 1.3e-30 137.5 241 44.4
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 2.2e-30 136.7 233 48.1
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.2e-30 136.7 233 48.1
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.2e-30 136.7 233 48.1
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 8.4e-30 134.8 230 40.9
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 8.4e-30 134.8 231 40.3
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.1e-29 134.4 232 46.6
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 2.4e-29 133.3 231 39.8
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 4.2e-29 132.5 243 42.8
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 4.2e-29 132.5 235 40.9
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.1e-28 130.2 227 41.4
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.7e-28 129.8 227 41.4
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 2.7e-28 129.8 227 40.1
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 6.0e-28 128.6 235 45.1
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.0e-27 127.9 233 50.2
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 1.3e-27 127.5 111 67.6
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 1.3e-27 127.5 227 42.3
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.3e-27 127.5 231 40.3
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 1.7e-27 127.1 240 39.6
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 1.7e-27 127.1 236 40.3
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 2.3e-27 126.7 235 40.4
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 3.0e-27 126.3 232 42.7
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 3.0e-27 126.3 240 39.6
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 3.9e-27 125.9 252 45.6
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 3.9e-27 125.9 242 43.4
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.1e-27 125.6 243 48.1
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 5.1e-27 125.6 237 43.0
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 6.6e-27 125.2 241 39.4
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 1.1e-26 124.4 239 43.1
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.1e-26 124.4 233 56.7
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 4.3e-26 122.5 241 38.2
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 9.6e-26 121.3 239 41.8
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 9.6e-26 121.3 114 57.9
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 1.3e-25 120.9 236 40.7
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 1.3e-25 120.9 227 43.2
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 1.3e-25 120.9 233 41.2
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 2.1e-25 120.2 226 42.5
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 2.1e-25 120.2 235 37.9
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 2.8e-25 119.8 233 46.8
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 1.1e-24 117.9 224 43.8
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 1.4e-24 117.5 221 43.4
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 2.4e-24 116.7 285 40.0
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 3.1e-24 116.3 224 38.4
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 3.1e-24 116.3 240 40.4
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 1.5e-23 114.0 108 58.3
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 1.5e-23 114.0 238 37.8
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 2.0e-23 113.6 114 57.9
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 5.8e-23 112.1 231 43.7
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 9.9e-23 111.3 240 39.6
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 1.7e-22 110.5 115 56.5
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 1.7e-22 110.5 100 62.0
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 2.9e-22 109.8 235 42.1
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 2.9e-22 109.8 233 40.3
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 2.9e-22 109.8 239 43.1
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 3.8e-22 109.4 137 51.1
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 8.4e-22 108.2 112 56.2
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 1.1e-21 107.8 251 38.2
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 3.2e-21 106.3 236 48.7
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 4.2e-21 105.9 239 39.7
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 9.3e-21 104.8 235 34.9
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 1.2e-20 104.4 238 39.5
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 1.6e-20 104.0 72 70.8
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 2.1e-20 103.6 223 44.4
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 4.6e-20 102.4 232 35.8
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 6.0e-20 102.1 224 42.0
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 6.0e-20 102.1 114 54.4
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 1.0e-19 101.3 223 47.1
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 1.7e-19 100.5 229 48.5
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 5.1e-19 99.0 234 41.5
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 5.1e-19 99.0 87 62.1
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 5.6e-18 95.5 115 53.0
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 8.1e-17 91.7 72 62.5
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 1.8e-16 90.5 207 36.2
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 2.4e-16 90.1 80 61.2
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 3.1e-16 89.7 222 34.2
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 3.1e-16 89.7 219 36.1
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 1.2e-15 87.8 96 51.0
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 1.7e-14 84.0 114 47.4
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 2.4e-13 80.1 107 48.6
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 7.1e-13 78.6 198 36.9
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 7.1e-13 78.6 100 49.0
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 9.3e-13 78.2 91 53.8
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 3.5e-12 76.3 256 34.8
HPP92_020257 Vanilla planifolia HOM05D006684 ORTHO05D008443 5.1e-11 72.4 78 55.1
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 5.6e-10 68.9 74 51.4
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 2.8e-09 66.6 227 29.5
Hma1.2p1_0053F.1_g030890 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 8.1e-09 65.1 70 52.9
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 4.9e-06 55.8 79 44.3


User provided reference genes

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