Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G33.13 Capsicum annuum HOM05D004950 ORTHO05D004838 1.4e-163 580.1 419 100.0
Peaxi162Scf00569g00049 Petunia axillaris HOM05D004950 ORTHO05D004838 1.7e-97 360.5 424 72.9
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 1.1e-88 331.3 389 63.2
PGSC0003DMG400046492 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.4e-83 314.3 416 60.1
PGSC0003DMG400020690 Solanum tuberosum HOM05D004950 ORTHO05D004838 7.0e-83 312.0 420 60.5
Nitab4.5_0000571g0050 Nicotiana tabacum HOM05D004950 ORTHO05D004838 5.0e-81 305.8 379 65.2
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 9.7e-77 291.6 412 48.8
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.7e-49 201.1 433 42.7
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 4.3e-48 196.4 433 42.5
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 2.9e-44 183.7 411 34.1
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 1.2e-42 178.3 430 41.4
Nitab4.5_0000241g0210 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.2e-42 178.3 385 43.9
Nitab4.5_0006824g0010 Nicotiana tabacum HOM05D004950 ORTHO05D004838 5.0e-41 172.9 433 45.0
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 1.4e-38 164.9 428 32.0
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 5.2e-38 162.9 407 31.4
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 1.5e-37 161.4 438 30.8
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 1.3e-36 158.3 416 31.0
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 1.3e-36 158.3 416 30.8
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 1.7e-36 157.9 395 41.8
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 2.9e-36 157.1 436 33.9
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 7.1e-35 152.5 421 42.3
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 1.0e-33 148.7 424 36.1
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 2.3e-33 147.5 454 30.0
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 2.3e-33 147.5 442 38.5
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 1.1e-32 145.2 430 30.9
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 1.9e-32 144.4 419 47.0
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 3.3e-32 143.7 415 43.6
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 5.6e-32 142.9 400 34.0
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.2e-31 141.7 325 36.6
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 1.6e-31 141.4 433 38.8
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 3.1e-30 137.1 425 30.1
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 4.0e-30 136.7 409 36.7
CSS0046927 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.5e-29 134.8 234 38.5
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.7e-28 131.3 421 35.9
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 2.2e-28 131.0 421 39.0
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 3.8e-28 130.2 392 33.7
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 3.8e-28 130.2 423 42.3
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 6.4e-28 129.4 421 29.0
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 2.4e-27 127.5 420 27.9
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 3.2e-27 127.1 357 33.9
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 2.7e-26 124.0 106 62.3
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 6.0e-26 122.9 391 29.2
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.3e-25 121.7 183 45.4
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 3.0e-25 120.6 433 47.3
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 3.0e-25 120.6 376 36.2
PGSC0003DMG400039193 Solanum tuberosum HOM05D004950 ORTHO05D004838 3.9e-25 120.2 114 61.4
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 1.5e-24 118.2 430 31.6
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 1.9e-24 117.9 434 43.5
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 4.3e-24 116.7 376 39.9
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 1.2e-23 115.2 387 38.8
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 1.6e-23 114.8 106 56.6
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 1.6e-23 114.8 423 38.5
Potri.005G072400 Populus trichocarpa HOM05D004950 ORTHO05D004838 2.1e-23 114.4 422 41.2
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 2.8e-23 114.0 105 56.2
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 3.6e-23 113.6 304 43.8
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 4.7e-23 113.2 428 31.3
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 6.2e-23 112.8 183 44.8
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 4.0e-22 110.2 105 55.2
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 1.2e-21 108.6 427 44.5
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 1.2e-21 108.6 304 29.6
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 1.5e-21 108.2 230 36.5
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 7.6e-21 105.9 92 56.5
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 9.9e-21 105.5 96 53.1
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.3e-20 105.1 366 33.3
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 1.7e-20 104.8 103 54.4
Thecc.01G096300 Theobroma cacao HOM05D004950 ORTHO05D004838 2.9e-20 104.0 206 34.5
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 4.9e-20 103.2 105 51.4
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 6.4e-20 102.8 105 52.4
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 6.4e-20 102.8 105 52.4
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 6.4e-20 102.8 105 52.4
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 6.4e-20 102.8 105 52.4
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.1e-19 102.1 441 32.9
Gohir.D11G219100 Gossypium hirsutum HOM05D004950 ORTHO05D004838 3.2e-19 100.5 353 38.2
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 4.2e-19 100.1 105 49.5
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.2e-18 98.6 105 50.5
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 1.2e-18 98.6 95 50.5
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 1.3e-17 95.1 105 45.7
COL.COLO4_27289 Corchorus olitorius HOM05D004950 ORTHO05D004838 2.3e-17 94.4 168 35.7
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 2.3e-17 94.4 89 56.2
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 2.3e-17 94.4 105 46.7
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 5.6e-16 89.7 93 51.6
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 5.6e-16 89.7 365 24.9
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.6e-15 88.2 278 27.7
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.6e-15 88.2 278 27.7
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.6e-15 88.2 278 27.7
PGSC0003DMG400046241 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.6e-15 88.2 86 57.0
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 6.2e-15 86.3 105 44.8
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 1.1e-14 85.5 412 25.5
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.1e-14 85.5 422 30.3
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 1.4e-14 85.1 297 28.3
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 1.8e-14 84.7 105 43.8
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 2.4e-14 84.3 105 43.8
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 4.0e-14 83.6 338 24.6
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 6.9e-14 82.8 354 24.6
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 9.0e-14 82.4 89 49.4
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 2.0e-13 81.3 86 50.0
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 2.6e-13 80.9 423 23.2
CANSAT01G1426 Cannabis sativa HOM05D004950 ORTHO05D004838 3.4e-13 80.5 381 42.5
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 3.4e-13 80.5 88 50.0
Gohir.A10G085000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 4.5e-13 80.1 295 40.3
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 9.9e-13 79.0 287 31.4
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.3e-12 78.6 522 21.8
Gohir.D10G104000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.9e-12 77.4 295 39.0
Gorai.011G113500 Gossypium raimondii HOM05D004950 ORTHO05D004838 2.9e-12 77.4 295 40.0
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 3.8e-12 77.0 105 48.6
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 6.4e-12 76.3 267 26.6
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 6.4e-12 76.3 124 45.2
Duzib147G1409 Durio zibethinus HOM05D004950 ORTHO05D004838 1.1e-11 75.5 149 33.6
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 3.2e-11 73.9 410 43.9
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 4.2e-11 73.6 288 37.5
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 4.2e-11 73.6 290 26.6
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.2e-10 72.0 433 42.0
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 3.5e-10 70.5 431 23.2
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 3.5e-10 70.5 139 36.0
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 6.0e-10 69.7 105 42.9
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 6.0e-10 69.7 105 42.9
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.0e-09 68.9 484 23.8
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 1.0e-09 68.9 453 34.0
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 1.0e-09 68.9 303 26.7
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 1.8e-09 68.2 295 25.8
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 2.3e-09 67.8 105 37.1
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 3.9e-09 67.0 509 24.2
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 3.9e-09 67.0 94 44.7
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 6.7e-09 66.2 100 40.0
HPP92_027242 Vanilla planifolia HOM05D004950 ORTHO05D004838 6.7e-09 66.2 101 39.6
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 1.1e-08 65.5 522 32.4
Rhsim10G0167200 Rhododendron simsii HOM05D004950 ORTHO05D004838 1.5e-08 65.1 388 31.7
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 1.9e-08 64.7 63 52.4
Gohir.A02G129300 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.5e-08 64.3 329 36.5
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 4.3e-08 63.5 107 33.6
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 4.3e-08 63.5 300 26.7
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 7.4e-08 62.8 91 39.6
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 1.3e-07 62.0 95 37.9
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 1.6e-07 61.6 293 41.6
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 2.1e-07 61.2 91 38.5
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 2.8e-07 60.8 48 58.3
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 3.7e-07 60.5 492 32.3
unitig_32.g11809 Utricularia gibba HOM05D004950 ORTHO05D004838 6.2e-07 59.7 91 39.6
Nn5g30016 Nelumbo nucifera HOM05D002657 ORTHO05D004838 1.4e-06 58.5 238 28.6
Gorai.003G041200 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.8e-06 58.2 140 30.0
HanXRQChr17g0546381 Helianthus annuus HOM05D004950 ORTHO05D004838 2.4e-06 57.8 74 44.6
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 5.3e-06 56.6 426 23.5
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 5.3e-06 56.6 417 22.1
HanXRQChr17g0546391 Helianthus annuus HOM05D004950 ORTHO05D004838 9.0e-06 55.8 114 35.1


User provided reference genes

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