Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 0.0e+00 1254.2 658 100.0
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 4.5e-312 1073.5 659 84.2
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.5e-292 1007.3 657 82.2
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 5.1e-290 1000.7 659 79.8
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 2.8e-264 915.2 553 87.2
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.1e-247 858.6 555 81.3
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.7e-229 799.7 626 64.9
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 6.8e-226 787.7 626 64.4
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.2e-225 786.9 657 62.9
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.7e-224 783.1 629 63.3
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.3e-216 756.9 625 62.7
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.1e-214 749.6 625 61.0
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 6.0e-214 748.0 627 62.2
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 3.0e-213 745.7 635 61.4
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.1e-212 743.8 629 60.4
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 2.8e-211 739.2 627 60.1
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 2.8e-211 739.2 630 59.0
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.4e-210 736.9 625 60.2
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 2.0e-209 733.0 631 60.2
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 6.4e-208 728.0 627 60.8
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.1e-207 727.2 630 59.5
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 1.1e-207 727.2 629 59.6
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 4.6e-206 721.8 626 58.9
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 4.6e-206 721.8 625 59.2
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 3.9e-205 718.8 627 59.2
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 7.3e-204 714.5 570 64.0
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.8e-202 709.9 631 58.0
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 5.8e-201 704.9 625 56.6
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 4.9e-200 701.8 625 58.2
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 3.2e-199 699.1 627 56.8
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 4.2e-199 698.7 625 57.1
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.4e-199 698.4 627 56.1
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.7e-198 696.0 627 56.5
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 4.3e-196 688.7 628 57.2
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.6e-195 686.8 629 56.6
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.1e-195 686.4 636 57.7
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 3.6e-195 685.6 626 56.4
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.1e-194 684.1 625 56.8
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 5.3e-194 681.8 628 55.1
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 2.0e-193 679.9 618 59.5
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.0e-193 679.9 629 54.8
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.6e-193 679.5 630 55.9
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 5.8e-193 678.3 633 56.2
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 9.9e-193 677.6 620 57.6
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 2.2e-192 676.4 627 56.0
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 3.8e-192 675.6 619 58.6
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 6.4e-192 674.9 653 55.3
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.1e-191 674.1 618 59.1
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.1e-191 674.1 625 55.0
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.9e-191 673.3 522 65.1
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 4.2e-191 672.2 618 57.8
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 2.7e-190 669.5 626 55.4
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 2.7e-190 669.5 661 54.0
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 7.9e-190 667.9 622 57.4
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 7.9e-190 667.9 622 57.4
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 1.0e-189 667.5 622 57.4
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 2.3e-189 666.4 620 56.6
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 6.6e-189 664.8 621 56.5
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 1.9e-188 663.3 613 56.6
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.6e-187 660.2 623 54.7
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.1e-187 659.8 514 65.8
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.8e-187 659.4 625 53.9
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.8e-187 659.4 625 54.7
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.8e-187 658.7 514 65.6
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 4.0e-186 655.6 623 54.4
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 3.8e-184 649.0 622 53.9
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 6.4e-184 648.3 625 53.6
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 6.4e-184 648.3 570 58.9
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.4e-183 647.1 666 52.3
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 5.5e-183 645.2 631 54.2
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 7.9e-182 641.3 622 53.5
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.3e-181 640.6 618 57.0
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 3.0e-181 639.4 584 57.5
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.9e-181 639.0 606 54.6
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 5.1e-181 638.6 569 58.2
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.9e-180 636.7 623 53.1
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.6e-179 633.6 589 55.5
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 2.8e-179 632.9 644 51.7
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 4.9e-176 622.1 628 51.6
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 2.7e-174 616.3 631 52.6
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 4.2e-167 592.4 626 50.2
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 4.2e-167 592.4 571 54.1
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.6e-163 580.5 533 56.5
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.1e-162 577.8 531 55.4
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 3.1e-162 576.2 513 57.5
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.0e-160 571.2 628 48.7
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 1.7e-160 570.5 625 51.2
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 2.9e-160 569.7 620 51.1
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 3.9e-157 559.3 629 46.7
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 2.5e-156 556.6 378 78.3
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 2.8e-155 553.1 630 48.3
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 6.9e-154 548.5 471 60.3
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 9.4e-151 538.1 440 61.1
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.9e-149 532.7 466 60.1
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 3.9e-149 532.7 599 49.6
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 2.8e-147 526.6 657 45.7
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 4.0e-133 479.6 633 45.2
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 6.6e-120 435.6 395 55.9
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 8.9e-117 425.2 588 42.9
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 1.3e-115 421.4 477 47.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 5.4e-106 389.4 282 72.7
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.2e-97 361.7 628 36.8
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.3e-91 341.7 634 32.6
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 2.9e-91 340.5 629 33.1
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 8.9e-85 318.9 384 47.9
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.2e-76 292.0 512 33.6
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 5.8e-76 289.7 628 30.1
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 6.4e-75 286.2 523 37.9
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 6.4e-75 286.2 523 37.9
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 7.1e-74 282.7 370 46.8
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 2.3e-72 277.7 163 86.5
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 1.8e-69 268.1 381 43.0
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 5.5e-50 203.4 275 41.8
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 4.6e-49 200.3 275 41.5
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.4e-45 188.7 186 52.7
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.5e-44 185.3 378 30.4
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 7.4e-39 166.4 145 60.7
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 2.2e-38 164.9 157 56.7
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 6.9e-37 159.8 157 55.4
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 6.5e-35 153.3 161 47.2
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.9e-34 151.8 147 57.1
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 6.1e-33 146.7 266 37.6
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 2.8e-30 137.9 168 40.5
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.8e-29 135.2 399 28.3
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.2e-28 132.5 137 54.7
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.5e-28 131.0 366 30.1
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.2e-27 128.3 144 46.5
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.8e-24 118.6 329 28.3
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 1.5e-23 115.5 279 33.3
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.3e-19 102.4 120 40.8
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.5e-18 98.2 81 60.5
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.2e-18 96.7 156 35.9
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 6.8e-16 90.1 87 51.7
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.2e-15 89.4 56 76.8
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 4.4e-15 87.4 77 53.2
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 4.8e-14 84.0 62 67.7
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 8.3e-14 83.2 95 49.5
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 2.3e-11 75.1 73 54.8
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 8.6e-11 73.2 73 53.4
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 2.1e-09 68.6 122 32.0
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 1.2e-07 62.8 38 76.3
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 3.4e-07 61.2 69 43.5
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.7e-07 60.5 82 41.5
SEGI_00815 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 9.8e-07 59.7 94 37.2
MCO12G231 Micromonas commoda HOM05D004744 ORTHO05D005655 1.3e-06 59.3 288 24.0
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 1.3e-06 59.3 47 59.6
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.2e-06 58.5 43 55.8
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 3.7e-06 57.8 128 28.9
TWI34G1186 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 6.3e-06 57.0 39 64.1


User provided reference genes

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