Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 6.2e-35 150.2 74 100.0
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.7e-29 132.1 74 86.5
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 3.0e-29 131.3 74 86.5
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 3.0e-29 131.3 74 86.5
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 1.4e-26 122.5 74 85.1
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 4.2e-23 110.9 77 74.0
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 3.3e-20 101.3 66 75.8
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 7.3e-20 100.1 74 70.3
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 7.3e-20 100.1 77 66.2
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 9.6e-20 99.8 71 70.4
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 9.6e-20 99.8 77 68.8
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 2.1e-19 98.6 77 67.5
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 3.6e-19 97.8 71 70.4
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 1.4e-18 95.9 71 69.0
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 4.0e-18 94.4 75 68.0
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 9.0e-18 93.2 63 74.6
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 1.2e-17 92.8 77 66.2
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 2.6e-17 91.7 58 75.9
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 7.6e-17 90.1 57 78.9
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 1.7e-16 89.0 68 69.1
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.7e-16 89.0 77 57.1
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 1.7e-16 89.0 77 57.1
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 1.7e-16 89.0 77 57.1
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 2.2e-16 88.6 54 87.0
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 2.9e-16 88.2 75 58.7
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 2.9e-16 88.2 75 64.0
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.9e-16 88.2 75 64.0
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.9e-16 88.2 75 64.0
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 3.8e-16 87.8 70 68.6
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 3.8e-16 87.8 73 61.6
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 4.9e-16 87.4 77 64.9
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 6.4e-16 87.0 70 68.6
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 6.4e-16 87.0 70 68.6
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 6.4e-16 87.0 70 68.6
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 6.4e-16 87.0 70 68.6
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 6.4e-16 87.0 79 59.5
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 8.4e-16 86.7 70 68.6
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 1.1e-15 86.3 66 65.2
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 1.1e-15 86.3 71 64.8
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 1.4e-15 85.9 81 59.3
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 1.9e-15 85.5 60 71.7
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 2.4e-15 85.1 60 70.0
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 2.4e-15 85.1 68 61.8
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 2.4e-15 85.1 68 64.7
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 2.4e-15 85.1 71 62.0
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 3.2e-15 84.7 77 59.7
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 3.2e-15 84.7 77 57.1
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 3.2e-15 84.7 68 61.8
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 3.2e-15 84.7 69 60.9
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 3.2e-15 84.7 58 70.7
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 4.2e-15 84.3 56 75.0
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 5.4e-15 84.0 77 58.4
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 7.1e-15 83.6 70 65.7
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 7.1e-15 83.6 70 64.3
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 7.1e-15 83.6 68 63.2
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 9.3e-15 83.2 70 64.3
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 9.3e-15 83.2 60 71.7
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 9.3e-15 83.2 60 71.7
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 1.2e-14 82.8 70 62.9
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 1.2e-14 82.8 70 62.9
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 1.2e-14 82.8 77 59.7
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 1.2e-14 82.8 70 64.3
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.6e-14 82.4 60 70.0
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 1.6e-14 82.4 60 68.3
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 2.1e-14 82.0 70 62.9
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 2.1e-14 82.0 76 61.8
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 2.1e-14 82.0 58 67.2
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 2.7e-14 81.6 70 61.4
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 2.7e-14 81.6 77 55.8
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 2.7e-14 81.6 77 59.7
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 3.5e-14 81.3 70 62.9
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 4.6e-14 80.9 58 69.0
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 7.9e-14 80.1 66 63.6
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 1.0e-13 79.7 68 64.7
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 1.8e-13 79.0 74 58.1
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 1.8e-13 79.0 59 69.5
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.8e-13 79.0 77 51.9
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 1.8e-13 79.0 70 60.0
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 8.7e-13 76.6 72 54.2
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 8.7e-13 76.6 67 58.2
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 1.1e-12 76.3 59 61.0
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 1.1e-12 76.3 72 52.8
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 1.5e-12 75.9 70 58.6
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 1.5e-12 75.9 72 51.4
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 1.9e-12 75.5 62 59.7
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 3.3e-12 74.7 70 55.7
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 4.3e-12 74.3 53 62.3
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 2.8e-11 71.6 61 63.9
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 1.4e-10 69.3 56 67.9
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.8e-10 68.9 58 55.2
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.5e-09 65.9 59 52.5
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 5.8e-09 63.9 54 64.8
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 1.7e-08 62.4 42 73.8
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 1.7e-08 62.4 59 49.2
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 1.9e-07 58.9 45 64.4
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 1.9e-07 58.9 48 66.7
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 3.2e-07 58.2 45 64.4
BcaC02g09481 Brassica carinata HOM05D007503 ORTHO05D009487 4.2e-07 57.8 49 65.3
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 1.2e-06 56.2 77 45.5
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 1.2e-06 56.2 77 45.5
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 2.7e-06 55.1 54 59.3
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 4.6e-06 54.3 45 64.4


User provided reference genes

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