Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G326.1 Capsicum annuum HOM05D003249 ORTHO05D003626 5.1e-31 137.1 69 100.0
CAN.G770.6 Capsicum annuum HOM05D003249 ORTHO05D003626 1.3e-23 112.5 67 85.1
Nitab4.5_0003845g0050 Nicotiana tabacum HOM05D003249 ORTHO05D003626 3.9e-23 110.9 67 83.6
Nitab4.5_0007139g0020 Nicotiana tabacum HOM05D003249 ORTHO05D003626 3.9e-23 110.9 67 83.6
Peaxi162Scf00165g00111 Petunia axillaris HOM05D003249 ORTHO05D003626 5.1e-23 110.5 67 83.6
PGSC0003DMG400008834 Solanum tuberosum HOM05D003249 ORTHO05D003626 6.6e-23 110.2 67 82.1
Solyc09g010840.1 Solanum lycopersicum HOM05D003249 ORTHO05D003626 8.6e-23 109.8 67 82.1
Sopen09g005570 Solanum pennellii HOM05D003249 ORTHO05D003626 8.6e-23 109.8 67 82.1
CAN.G499.1 Capsicum annuum HOM05D003249 ORTHO05D003626 1.8e-20 102.1 58 91.4
Duzib093G0316 Durio zibethinus HOM05D003249 ORTHO05D003626 6.9e-20 100.1 66 75.8
GSVIVG01034166001 Vitis vinifera HOM05D003249 ORTHO05D003626 1.2e-19 99.4 66 72.7
Lj2C94T2 Lonicera japonica HOM05D003249 ORTHO05D003626 2.0e-19 98.6 66 72.7
Thecc.05G039300 Theobroma cacao HOM05D003249 ORTHO05D003626 2.0e-19 98.6 66 74.2
TAR369G0046 Trochodendron aralioides HOM05D003249 ORTHO05D003626 2.0e-19 98.6 66 72.7
Ciclev10012089m.g Citrus clementina HOM05D003249 ORTHO05D003626 4.4e-19 97.4 66 72.7
COL.COLO4_14794 Corchorus olitorius HOM05D003249 ORTHO05D003626 4.4e-19 97.4 66 72.7
Ca_07552_v3 Cicer arietinum L. HOM05D003249 ORTHO05D003626 5.8e-19 97.1 66 72.7
Duzib128G1068 Durio zibethinus HOM05D003249 ORTHO05D003626 1.3e-18 95.9 66 71.2
Ah.09g232000 Amaranthus hybridus HOM05D003249 ORTHO05D003626 1.7e-18 95.5 65 67.7
Cpa.g.sc333.1 Carica papaya HOM05D003249 ORTHO05D003626 1.7e-18 95.5 66 71.2
QL07p048411 Quercus lobata HOM05D003249 ORTHO05D003626 1.7e-18 95.5 66 71.2
QL07p048500 Quercus lobata HOM05D003249 ORTHO05D003626 1.7e-18 95.5 66 71.2
Atru.chr8.1979 Acer truncatum HOM05D003249 ORTHO05D003626 2.9e-18 94.7 67 71.6
MSTRG.26777 Avicennia marina HOM05D003249 ORTHO05D003626 2.9e-18 94.7 66 71.2
CSS0015300 Camellia sinensis var. sinensis HOM05D003249 ORTHO05D003626 3.8e-18 94.4 66 72.7
Duzib106G1674 Durio zibethinus HOM05D003249 ORTHO05D003626 4.9e-18 94.0 65 72.3
Hma1.2p1_0936F.1_g238715 Hydrangea macrophylla HOM05D003249 ORTHO05D003626 4.9e-18 94.0 66 71.2
Dinv37168 Davidia involucrata HOM05D003249 ORTHO05D003626 6.4e-18 93.6 66 68.2
TWI53G0245 Tripterygium wilfordii HOM05D003249 ORTHO05D003626 6.4e-18 93.6 66 71.2
PGR119G1544 Punica granatum HOM05D003249 ORTHO05D003626 8.4e-18 93.2 65 69.2
Aqoxy4G02897 Aquilegia oxysepala HOM05D003249 ORTHO05D003626 1.4e-17 92.4 66 66.7
CiPaw.09G192900 Carya illinoinensis HOM05D003249 ORTHO05D003626 1.4e-17 92.4 66 68.2
Hma1.2p1_1899F.1_g306940 Hydrangea macrophylla HOM05D003249 ORTHO05D003626 1.4e-17 92.4 65 67.7
Gohir.A04G082600 Gossypium hirsutum HOM05D003249 ORTHO05D003626 1.9e-17 92.0 66 68.2
Gohir.D04G121600 Gossypium hirsutum HOM05D003249 ORTHO05D003626 1.9e-17 92.0 66 68.2
Gorai.012G104100 Gossypium raimondii HOM05D003249 ORTHO05D003626 1.9e-17 92.0 66 68.2
MD04G1129500 Malus domestica HOM05D003249 ORTHO05D003626 1.9e-17 92.0 66 69.7
Prupe.6G255800 Prunus persica HOM05D003249 ORTHO05D003626 2.4e-17 91.7 66 69.7
TAR633G2142 Trochodendron aralioides HOM05D003249 ORTHO05D003626 3.2e-17 91.3 63 69.8
AUR62025762 Chenopodium quinoa HOM05D003249 ORTHO05D003626 4.2e-17 90.9 65 63.1
AUR62041339 Chenopodium quinoa HOM05D003249 ORTHO05D003626 5.4e-17 90.5 65 63.1
AUR62044763 Chenopodium quinoa HOM05D003249 ORTHO05D003626 5.4e-17 90.5 65 63.1
Cc06_g02600 Coffea canephora HOM05D003249 ORTHO05D003626 5.4e-17 90.5 65 67.7
Lj3g0019444 Lotus japonicus HOM05D003249 ORTHO05D003626 5.4e-17 90.5 66 66.7
Psat3g139520 Pisum sativum HOM05D003249 ORTHO05D003626 5.4e-17 90.5 66 69.7
EL10Ac5g11590 Beta vulgaris HOM05D003249 ORTHO05D003626 7.1e-17 90.1 65 64.6
Potri.006G085900 Populus trichocarpa HOM05D003249 ORTHO05D003626 7.1e-17 90.1 65 66.2
Migut.L01947 Erythranthe guttata HOM05D003249 ORTHO05D003626 9.3e-17 89.7 59 76.3
RcHm_v2.0_Chr3g0466491 Rosa chinensis HOM05D003249 ORTHO05D003626 9.3e-17 89.7 66 66.7
Dinv35596 Davidia involucrata HOM05D003249 ORTHO05D003626 1.2e-16 89.4 66 68.2
Lalb_Chr19g0125311 Lupinus albus HOM05D003249 ORTHO05D003626 1.2e-16 89.4 66 68.2
DCAR_017860 Daucus carota HOM05D003249 ORTHO05D003626 1.6e-16 89.0 67 70.1
Oeu049252.1 Olea europaea HOM05D003249 ORTHO05D003626 1.6e-16 89.0 66 68.2
Sabra06G0065400 Salix brachista HOM05D003249 ORTHO05D003626 1.6e-16 89.0 65 66.2
MD12G1142500 Malus domestica HOM05D003249 ORTHO05D003626 2.1e-16 88.6 66 68.2
TWI74G0683 Tripterygium wilfordii HOM05D003249 ORTHO05D003626 2.1e-16 88.6 66 66.7
Ah.14g085420 Amaranthus hybridus HOM05D003249 ORTHO05D003626 2.7e-16 88.2 65 64.6
Eucgr.H01113 Eucalyptus grandis HOM05D003249 ORTHO05D003626 2.7e-16 88.2 66 63.6
Manes.09G092900 Manihot esculenta HOM05D003249 ORTHO05D003626 2.7e-16 88.2 66 68.2
FvH4_2g38350 Fragaria vesca HOM05D003249 ORTHO05D003626 4.6e-16 87.4 65 66.2
FvH4_6g13640 Fragaria vesca HOM05D003249 ORTHO05D003626 4.6e-16 87.4 65 66.2
FAN02G4009 Fragaria x ananassa HOM05D003249 ORTHO05D003626 4.6e-16 87.4 65 66.2
FAN05G3825 Fragaria x ananassa HOM05D003249 ORTHO05D003626 4.6e-16 87.4 65 66.2
FAN09G0456 Fragaria x ananassa HOM05D003249 ORTHO05D003626 4.6e-16 87.4 65 66.2
FAN14G3579 Fragaria x ananassa HOM05D003249 ORTHO05D003626 4.6e-16 87.4 65 66.2
unitig_26.g9411 Utricularia gibba HOM05D003249 ORTHO05D003626 4.6e-16 87.4 66 66.7
ClCG10G021170 Citrullus lanatus HOM05D003249 ORTHO05D003626 7.8e-16 86.7 66 63.6
Actinidia05315 Actinidia chinensis HOM05D003249 ORTHO05D003626 1.0e-15 86.3 66 66.7
Sed0010131 Sechium edule HOM05D003249 ORTHO05D003626 1.3e-15 85.9 66 63.6
MELO3C030739.2 Cucumis melo HOM05D003249 ORTHO05D003626 2.3e-15 85.1 66 62.1
CsaV3_3G034870 Cucumis sativus L. HOM05D003249 ORTHO05D003626 2.3e-15 85.1 66 62.1
AUR62030471 Chenopodium quinoa HOM05D003249 ORTHO05D003626 3.0e-15 84.7 65 60.0
arahy.Tifrunner.gnm1.ann1.2DN1X0 Arachis hypogaea HOM05D003249 ORTHO05D003626 3.9e-15 84.3 66 65.2
arahy.Tifrunner.gnm1.ann1.Z9PFJZ Arachis hypogaea HOM05D003249 ORTHO05D003626 3.9e-15 84.3 66 65.2
Oeu016471.1 Olea europaea HOM05D003249 ORTHO05D003626 3.9e-15 84.3 66 66.7
Phvul.010G009900 Phaseolus vulgaris HOM05D003249 ORTHO05D003626 5.1e-15 84.0 67 62.7
SalBow4G1476 Salvia bowleyana HOM05D003249 ORTHO05D003626 6.6e-15 83.6 59 67.8
SalBow4G2178 Salvia bowleyana HOM05D003249 ORTHO05D003626 6.6e-15 83.6 59 67.8
Glyma.03G081900 Glycine max HOM05D003249 ORTHO05D003626 1.1e-14 82.8 65 63.1
Cfa017373 Carpinus fangiana HOM05D003249 ORTHO05D003626 1.5e-14 82.4 63 66.7
Phvul.010G009800 Phaseolus vulgaris HOM05D003249 ORTHO05D003626 1.5e-14 82.4 65 63.1
AUR62041017 Chenopodium quinoa HOM05D003249 ORTHO05D003626 2.5e-14 81.6 65 58.5
SalBow4G2946 Salvia bowleyana HOM05D003249 ORTHO05D003626 3.3e-14 81.3 59 67.8
Eucgr.K03130 Eucalyptus grandis HOM05D003249 ORTHO05D003626 4.3e-14 80.9 63 60.3
DCAR_009227 Daucus carota HOM05D003249 ORTHO05D003626 9.6e-14 79.7 56 73.2
SalBow4G1884 Salvia bowleyana HOM05D003249 ORTHO05D003626 1.6e-13 79.0 59 66.1
THA.LOC104806562 Tarenaya hassleriana HOM05D003249 ORTHO05D003626 1.6e-13 79.0 64 57.8
Sc20g0004980 Simmondsia chinensis HOM05D003249 ORTHO05D003626 2.1e-13 78.6 67 58.2
BcaC01g05604 Brassica carinata HOM05D003249 ORTHO05D003626 2.8e-13 78.2 64 60.9
BolC3t14840H Brassica oleracea HOM05D003249 ORTHO05D003626 2.8e-13 78.2 64 60.9
Rhsim05G0193400 Rhododendron simsii HOM05D003249 ORTHO05D003626 2.8e-13 78.2 58 69.0
PGR004G0678 Punica granatum HOM05D003249 ORTHO05D003626 6.2e-13 77.0 63 63.5
Sed0011900 Sechium edule HOM05D003249 ORTHO05D003626 6.2e-13 77.0 66 56.1
A03p20770 Brassica napus HOM05D003249 ORTHO05D003626 8.1e-13 76.6 64 59.4
BraA03t11318Z Brassica rapa HOM05D003249 ORTHO05D003626 8.1e-13 76.6 64 59.4
SHI12691 Sapria himalayana HOM05D003249 ORTHO05D003626 8.1e-13 76.6 59 62.7
Glyma.18G151400 Glycine max HOM05D003249 ORTHO05D003626 1.8e-12 75.5 61 63.9
PSO384G4328 Papaver somniferum HOM05D003249 ORTHO05D003626 1.8e-12 75.5 65 56.9
Sp4g19990 Schrenkiella parvula HOM05D003249 ORTHO05D003626 1.8e-12 75.5 64 57.8
vmacro20160 Vaccinium macrocarpon HOM05D003249 ORTHO05D003626 1.8e-12 75.5 58 65.5
A05p08330 Brassica napus HOM05D003249 ORTHO05D003626 2.4e-12 75.1 64 57.8
BraA05t19798Z Brassica rapa HOM05D003249 ORTHO05D003626 2.4e-12 75.1 64 57.8
DCAR_020848 Daucus carota HOM05D003249 ORTHO05D003626 3.1e-12 74.7 56 67.9
Aa31LG5G23120 Aethionema arabicum HOM05D003249 ORTHO05D003626 4.0e-12 74.3 60 58.3
PSO339G2503 Papaver somniferum HOM05D003249 ORTHO05D003626 4.0e-12 74.3 65 56.9
BcaB01g03765 Brassica carinata HOM05D003249 ORTHO05D003626 5.3e-12 73.9 64 57.8
PSO339G4026 Papaver somniferum HOM05D003249 ORTHO05D003626 5.3e-12 73.9 65 56.9
BcaC02g11882 Brassica carinata HOM05D003249 ORTHO05D003626 6.9e-12 73.6 64 56.2
C04p10320 Brassica napus HOM05D003249 ORTHO05D003626 6.9e-12 73.6 64 56.2
BolC4t22631H Brassica oleracea HOM05D003249 ORTHO05D003626 6.9e-12 73.6 64 56.2
Thhalv10016830m.g Eutrema salsugineum HOM05D003249 ORTHO05D003626 6.9e-12 73.6 59 62.7
BcaB02g09267 Brassica carinata HOM05D003249 ORTHO05D003626 9.0e-12 73.2 64 56.2
C03p24410 Brassica napus HOM05D003249 ORTHO05D003626 9.0e-12 73.2 64 59.4
Actinidia13145 Actinidia chinensis HOM05D003249 ORTHO05D003626 1.2e-11 72.8 54 70.4
Glyma.07G132400 Glycine max HOM05D003249 ORTHO05D003626 1.2e-11 72.8 66 57.6
Glyma.18G181300 Glycine max HOM05D003249 ORTHO05D003626 1.2e-11 72.8 66 57.6
CDE07G1063 Ceratophyllum demersum HOM05D003249 ORTHO05D003626 1.5e-11 72.4 57 63.2
AL4G34140 Arabidopsis lyrata HOM05D003249 ORTHO05D003626 2.6e-11 71.6 59 59.3
AL4G34200 Arabidopsis lyrata HOM05D003249 ORTHO05D003626 2.6e-11 71.6 59 59.3
Carub.0004s1956 Capsella rubella HOM05D003249 ORTHO05D003626 2.6e-11 71.6 59 59.3
Haze_20796 Corylus avellana HOM05D003249 ORTHO05D003626 4.5e-11 70.9 65 60.0
CDE04G2860 Ceratophyllum demersum HOM05D003249 ORTHO05D003626 7.6e-11 70.1 58 60.3
VMungo0331G0434 Vigna mungo HOM05D003249 ORTHO05D003626 7.6e-11 70.1 68 55.9
CARHR131950 Cardamine hirsuta HOM05D003249 ORTHO05D003626 9.9e-11 69.7 59 57.6
AT2G37630 Arabidopsis thaliana HOM05D003249 ORTHO05D003626 1.3e-10 69.3 59 57.6
Medtr7g061550 Medicago truncatula HOM05D003249 ORTHO05D003626 1.3e-10 69.3 44 77.3
VMungo0331G1871 Vigna mungo HOM05D003249 ORTHO05D003626 6.4e-10 67.0 65 52.3
TPR.G23297 Trifolium pratense HOM05D003249 ORTHO05D003626 8.4e-10 66.6 41 78.0
HPP92_006615 Vanilla planifolia HOM05D003249 ORTHO05D003626 8.4e-10 66.6 56 62.5
SGA_v2.0_scaffold94G28601 Striga asiatica HOM05D003249 ORTHO05D003626 3.2e-09 64.7 48 66.7
Lj3g0003043 Lotus japonicus HOM05D003249 ORTHO05D003626 5.4e-09 63.9 59 57.6
Atru.chr8.836 Acer truncatum HOM05D003249 ORTHO05D003626 7.1e-09 63.5 68 47.1
VMungo1383G2387 Vigna mungo HOM05D003249 ORTHO05D003626 7.1e-09 63.5 37 75.7
MBI09_g05212_MAGBIO Magnolia biondii HOM05D003249 ORTHO05D003626 1.6e-08 62.4 67 46.3
MBI09_g36361_MAGBIO Magnolia biondii HOM05D003249 ORTHO05D003626 1.6e-08 62.4 67 46.3
Duzib133G1290 Durio zibethinus HOM05D003249 ORTHO05D003626 4.6e-08 60.8 56 57.1
HPP92_028579 Vanilla planifolia HOM05D003249 ORTHO05D003626 4.6e-08 60.8 58 50.0
COL.COLO4_16194 Corchorus olitorius HOM05D003249 ORTHO05D003626 6.0e-08 60.5 60 51.7
Sed0026929 Sechium edule HOM05D003249 ORTHO05D003626 1.0e-07 59.7 60 50.0
Cc07_g09050 Coffea canephora HOM05D003249 ORTHO05D003626 1.3e-07 59.3 59 50.8
Duzib138G0350 Durio zibethinus HOM05D003249 ORTHO05D003626 1.3e-07 59.3 60 51.7
FAN05G3959 Fragaria x ananassa HOM05D003249 ORTHO05D003626 1.3e-07 59.3 67 44.8
Phvul.008G102300 Phaseolus vulgaris HOM05D003249 ORTHO05D003626 1.8e-07 58.9 37 73.0
Thecc.04G138000 Theobroma cacao HOM05D003249 ORTHO05D003626 1.8e-07 58.9 56 55.4
AUR62041337 Chenopodium quinoa HOM05D003249 ORTHO05D003626 3.0e-07 58.2 44 63.6
Potri.017G112300 Populus trichocarpa HOM05D003249 ORTHO05D003626 3.0e-07 58.2 56 51.8
Ciclev10011915m.g Citrus clementina HOM05D003249 ORTHO05D003626 3.9e-07 57.8 56 51.8
Nitab4.5_0007287g0010 Nicotiana tabacum HOM05D003249 ORTHO05D003626 3.9e-07 57.8 58 51.7
Zm00001eb029300 Zea mays HOM05D003249 ORTHO05D003626 5.1e-07 57.4 60 46.7
RcHm_v2.0_Chr2g0163191 Rosa chinensis HOM05D003249 ORTHO05D003626 6.7e-07 57.0 56 48.2
ClCG05G012050 Citrullus lanatus HOM05D003249 ORTHO05D003626 8.7e-07 56.6 55 54.5
GSVIVG01036446001 Vitis vinifera HOM05D003249 ORTHO05D003626 1.1e-06 56.2 56 50.0
ATR0807G158 Amborella trichopoda HOM05D003249 ORTHO05D003626 1.9e-06 55.5 65 46.2
Cfa007950 Carpinus fangiana HOM05D003249 ORTHO05D003626 2.5e-06 55.1 53 52.8
Oeu052994.1 Olea europaea HOM05D003249 ORTHO05D003626 2.5e-06 55.1 56 48.2
CsaV3_3G020410 Cucumis sativus L. HOM05D003249 ORTHO05D003626 3.3e-06 54.7 53 52.8
MBI05_g22030_MAGBIO Magnolia biondii HOM05D003249 ORTHO05D003626 3.3e-06 54.7 39 66.7
CiPaw.04G040200 Carya illinoinensis HOM05D003249 ORTHO05D003626 4.3e-06 54.3 56 50.0
Migut.L00302 Erythranthe guttata HOM05D003249 ORTHO05D003626 4.3e-06 54.3 52 50.0
FvH4_6g45380 Fragaria vesca HOM05D003249 ORTHO05D003626 4.3e-06 54.3 56 48.2
FAN02G3542 Fragaria x ananassa HOM05D003249 ORTHO05D003626 4.3e-06 54.3 56 48.2
FAN14G4557 Fragaria x ananassa HOM05D003249 ORTHO05D003626 4.3e-06 54.3 56 48.2
CiPaw.03G059300 Carya illinoinensis HOM05D003249 ORTHO05D003626 5.6e-06 53.9 66 43.9
Sabra17G0093100 Salix brachista HOM05D003249 ORTHO05D003626 5.6e-06 53.9 56 46.4
Dinv34852 Davidia involucrata HOM05D003249 ORTHO05D003626 7.4e-06 53.5 59 45.8
FAN09G3920 Fragaria x ananassa HOM05D003249 ORTHO05D003626 9.6e-06 53.1 56 48.2
QL02p052683 Quercus lobata HOM05D003249 ORTHO05D003626 9.6e-06 53.1 55 50.9


User provided reference genes

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