Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 6.5e-154 547.4 275 100.0
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 9.4e-129 463.8 272 87.9
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 9.4e-129 463.8 272 87.1
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 3.9e-127 458.4 272 86.8
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 5.7e-126 454.5 272 86.0
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 1.2e-120 436.8 266 81.6
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 8.8e-111 404.1 237 83.1
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 1.6e-99 366.7 265 69.1
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 5.9e-99 364.8 256 73.0
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.4e-95 353.6 268 67.9
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 7.8e-91 337.8 267 64.8
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 1.0e-90 337.4 280 65.0
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 3.0e-90 335.9 227 73.1
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 3.3e-89 332.4 270 63.7
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 6.2e-88 328.2 266 62.8
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 6.2e-88 328.2 267 63.3
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 8.1e-88 327.8 266 63.2
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.7e-85 320.1 261 63.2
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 1.1e-84 317.4 265 61.1
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 5.4e-84 315.1 267 63.3
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 2.7e-83 312.8 276 63.0
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 5.6e-81 305.1 234 66.7
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 7.3e-81 304.7 259 61.8
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 1.2e-80 303.9 260 64.2
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 3.6e-80 302.4 239 65.3
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 1.1e-79 300.8 263 60.5
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 3.1e-79 299.3 263 60.8
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 4.0e-79 298.9 276 58.3
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 8.9e-79 297.7 239 64.9
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 3.4e-78 295.8 231 64.9
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 3.4e-78 295.8 271 62.0
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 3.4e-78 295.8 239 64.4
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 4.1e-76 288.9 275 57.8
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 5.4e-76 288.5 274 57.3
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 2.3e-74 283.1 280 57.5
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.3e-74 283.1 249 61.4
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 3.9e-74 282.3 249 61.0
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 6.6e-74 281.6 271 55.7
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 1.9e-73 280.0 242 59.5
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 1.9e-73 280.0 263 60.5
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 5.6e-73 278.5 260 58.8
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.1e-72 276.6 249 60.2
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 4.7e-72 275.4 230 63.0
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 6.2e-72 275.0 277 56.7
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.2e-72 275.0 249 60.2
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 1.1e-71 274.2 271 55.7
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 1.4e-71 273.9 267 56.6
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 3.1e-71 272.7 220 61.8
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 4.0e-71 272.3 229 62.9
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 4.0e-71 272.3 285 56.8
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 2.0e-70 270.0 259 56.0
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 4.4e-70 268.9 258 57.8
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 4.4e-70 268.9 258 58.1
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 5.8e-70 268.5 238 61.3
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.3e-69 267.3 219 63.5
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.3e-69 267.3 244 59.0
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 4.9e-69 265.4 212 63.2
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 4.9e-69 265.4 250 60.4
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 3.2e-68 262.7 220 63.2
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 1.2e-67 260.8 260 56.5
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 2.7e-67 259.6 267 54.3
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 1.7e-66 256.9 270 55.2
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 1.7e-66 256.9 221 60.2
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 6.6e-66 255.0 258 55.8
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 1.1e-65 254.2 254 55.5
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 1.6e-64 250.4 262 56.1
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 2.1e-64 250.0 257 57.2
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 5.3e-63 245.4 242 56.2
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 6.9e-63 245.0 214 60.7
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 9.0e-63 244.6 260 51.9
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 2.0e-62 243.4 225 56.9
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.2e-61 240.0 256 53.9
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.2e-61 240.0 256 53.9
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 4.9e-61 238.8 245 55.1
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 4.9e-61 238.8 232 55.6
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 3.2e-60 236.1 173 69.9
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 5.4e-60 235.3 257 54.1
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 7.1e-60 235.0 219 60.7
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 7.1e-60 235.0 360 42.8
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 3.5e-59 232.6 248 53.6
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 4.6e-59 232.3 257 52.5
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.0e-58 231.1 235 55.3
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 1.7e-58 230.3 218 57.3
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 2.3e-58 229.9 247 53.8
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 6.6e-58 228.4 218 58.3
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.3e-56 224.2 224 55.4
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 8.1e-56 221.5 227 55.5
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 9.9e-54 214.5 263 50.6
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 2.9e-53 213.0 255 45.9
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 4.9e-53 212.2 263 49.0
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 7.1e-52 208.4 263 47.5
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.2e-51 207.6 208 55.3
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.2e-51 207.6 208 55.3
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 1.6e-51 207.2 275 47.6
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 1.6e-51 207.2 275 47.6
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.3e-50 203.4 234 51.3
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 3.3e-49 199.5 238 50.8
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 5.6e-49 198.7 200 56.0
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 5.6e-49 198.7 200 56.0
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 7.4e-49 198.4 266 47.4
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 7.4e-49 198.4 190 57.4
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 4.8e-48 195.7 200 55.0
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 4.8e-48 195.7 200 55.0
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 1.1e-47 194.5 238 49.6
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 2.4e-47 193.4 200 54.5
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 3.1e-47 193.0 253 45.5
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 3.4e-46 189.5 220 50.9
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 2.5e-44 183.3 118 78.0
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 6.7e-42 175.3 177 57.1
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 1.8e-39 167.2 236 42.8
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 2.4e-39 166.8 98 83.7
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 2.4e-39 166.8 210 50.5
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 5.9e-38 162.2 155 54.2
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 2.2e-32 143.7 99 73.7
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 3.1e-31 139.8 159 49.1
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 1.0e-26 124.8 177 41.8
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 6.7e-26 122.1 70 85.7
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.0e-25 120.6 158 47.5
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 2.0e-25 120.6 169 45.6
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 3.3e-25 119.8 73 79.5
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 7.4e-25 118.6 116 52.6
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 1.7e-24 117.5 118 54.2
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 5.9e-22 109.0 204 37.3
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.0e-21 108.2 80 68.8
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 1.7e-21 107.5 204 38.2
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 5.0e-21 105.9 64 82.8
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 3.6e-19 99.8 237 35.9
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 3.0e-18 96.7 63 77.8
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 6.3e-16 89.0 48 93.8
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 8.8e-10 68.6 70 52.9
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 2.6e-09 67.0 131 38.9
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-08 64.7 86 39.5
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 9.1e-07 58.5 89 43.8


User provided reference genes

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