Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 3.4e-126 454.9 216 100.0
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.8e-122 442.6 216 97.2
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.8e-122 442.6 216 97.2
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.5e-121 439.5 216 96.8
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 1.9e-121 439.1 216 96.3
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.5e-113 412.9 216 90.7
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 2.8e-112 408.7 216 90.7
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 2.8e-112 408.7 216 90.3
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 4.8e-112 407.9 216 91.7
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 1.4e-111 406.4 216 89.8
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 4.1e-111 404.8 216 88.9
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.5e-110 402.9 216 89.4
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 1.5e-110 402.9 216 90.3
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 3.4e-110 401.7 216 88.0
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 3.4e-110 401.7 216 89.8
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 3.4e-110 401.7 216 88.9
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 5.9e-110 401.0 216 88.9
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 7.7e-110 400.6 216 89.4
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.0e-109 400.2 218 87.6
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.3e-109 399.8 216 88.4
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.7e-109 399.4 216 88.4
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 1.7e-109 399.4 216 87.5
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 1.7e-109 399.4 217 89.4
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 2.2e-109 399.1 216 89.4
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 2.2e-109 399.1 216 89.4
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 2.9e-109 398.7 216 87.5
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.8e-109 398.3 217 88.9
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 3.8e-109 398.3 214 89.3
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 5.0e-109 397.9 216 88.9
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 6.5e-109 397.5 215 88.4
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 6.5e-109 397.5 215 88.4
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 8.5e-109 397.1 216 87.0
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 8.5e-109 397.1 216 88.4
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 8.5e-109 397.1 216 88.0
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.9e-108 396.0 220 88.2
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 4.2e-108 394.8 216 87.0
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 5.5e-108 394.4 216 86.6
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 5.5e-108 394.4 216 87.0
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 5.5e-108 394.4 216 87.0
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 7.2e-108 394.0 216 87.0
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 9.4e-108 393.7 217 86.2
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 9.4e-108 393.7 220 86.8
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.6e-107 392.9 203 90.6
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 3.6e-107 391.7 190 96.8
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 4.7e-107 391.3 216 87.5
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 6.1e-107 391.0 216 86.6
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 1.4e-106 389.8 238 81.1
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.4e-106 389.8 217 84.3
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 2.3e-106 389.0 216 85.6
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 2.3e-106 389.0 217 84.3
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 2.3e-106 389.0 186 97.3
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 3.0e-106 388.7 216 87.0
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 3.0e-106 388.7 232 82.3
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 6.7e-106 387.5 221 84.2
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 8.8e-106 387.1 216 85.2
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 1.1e-105 386.7 217 84.8
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 2.0e-105 386.0 216 86.1
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 2.6e-105 385.6 216 83.8
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 5.7e-105 384.4 217 84.3
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 7.4e-105 384.0 217 83.9
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 9.7e-105 383.6 216 85.6
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.3e-104 383.3 216 85.6
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.1e-103 380.2 216 82.9
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.4e-103 379.8 212 83.0
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.4e-103 379.0 203 88.2
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 2.6e-102 375.6 220 83.6
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 5.9e-102 374.4 216 83.3
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.0e-101 373.6 216 81.9
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.0e-101 373.6 204 85.3
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.1e-100 370.2 216 83.8
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.9e-100 369.4 202 86.1
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 3.2e-100 368.6 217 80.6
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 5.5e-100 367.9 217 81.1
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.2e-99 366.7 217 80.2
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.2e-99 366.7 186 91.4
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 1.6e-99 366.3 217 80.6
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 2.1e-99 365.9 217 80.6
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 3.6e-99 365.2 217 80.2
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 3.6e-99 365.2 217 80.2
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 6.1e-99 364.4 217 80.2
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 6.1e-99 364.4 219 76.7
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 3.0e-98 362.1 217 79.7
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 6.7e-98 360.9 190 88.4
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 6.7e-98 360.9 197 88.3
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.5e-97 359.8 198 85.9
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 2.0e-97 359.4 242 74.8
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.0e-97 359.4 196 84.2
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 5.7e-97 357.8 178 91.6
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 5.7e-97 357.8 219 74.9
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 7.5e-97 357.5 216 76.9
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 7.5e-97 357.5 180 91.1
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 1.2e-94 350.1 217 77.0
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 5.9e-94 347.8 215 76.7
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 5.9e-94 347.8 212 77.8
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 1.7e-93 346.3 189 85.7
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 2.2e-93 345.9 206 79.6
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 5.0e-93 344.7 189 87.3
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 5.5e-92 341.3 190 86.8
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 5.7e-89 331.3 192 79.2
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 1.3e-88 330.1 203 78.3
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.3e-88 330.1 196 74.5
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 2.2e-85 319.3 196 71.4
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.9e-84 316.2 215 67.4
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 8.8e-82 307.4 196 69.9
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.7e-77 293.1 145 92.4
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.6e-76 288.1 171 81.3
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.6e-76 288.1 171 81.3
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 9.5e-76 287.3 199 65.8
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 4.4e-73 278.5 145 86.2
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 3.2e-71 272.3 133 93.2
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.5e-68 263.5 133 91.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 7.3e-68 261.2 133 89.5
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 5.4e-63 245.0 130 84.6
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.1e-60 237.3 121 87.6
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-56 223.8 143 75.5
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.4e-55 219.5 126 84.1
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.9e-45 185.7 107 85.0
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 8.9e-42 174.5 89 92.1
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 8.9e-42 174.5 93 88.2
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 6.0e-30 135.2 83 80.7
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 1.0e-29 134.4 87 78.2
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 2.8e-27 126.3 205 35.6
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 5.1e-21 105.5 202 33.7
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 5.5e-15 85.5 40 95.0
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 6.0e-14 82.0 63 65.1
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 3.3e-12 76.3 64 60.9
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.9e-07 60.5 39 66.7


User provided reference genes

Program Settings