Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G323.3 Capsicum annuum HOM05D000718 ORTHO05D115182 1.0e-114 416.8 210 100.0
CAN.G22.38 Capsicum annuum HOM05D000718 ORTHO05D013272 4.8e-24 115.5 59 91.5
CAN.G610.1 Capsicum annuum HOM05D000718 ORTHO05D013272 2.6e-22 109.8 59 86.4
CAN.G17.21 Capsicum annuum HOM05D000718 ORTHO05D013272 2.2e-21 106.7 59 86.4
CAN.G46.37 Capsicum annuum HOM05D000718 ORTHO05D013272 2.2e-21 106.7 59 84.7
CAN.G24005.1 Capsicum annuum HOM05D000718 ORTHO05D013272 7.2e-20 101.7 59 83.1
CAN.G398.18 Capsicum annuum HOM05D000718 ORTHO05D013272 2.7e-19 99.8 59 83.1
CAN.G1058.7 Capsicum annuum HOM05D000718 ORTHO05D013272 1.1e-17 94.4 52 86.5
CAN.G97.47 Capsicum annuum HOM05D000718 ORTHO05D013272 1.1e-17 94.4 52 86.5
CAN.G160.51 Capsicum annuum HOM05D000718 ORTHO05D013272 4.3e-17 92.4 60 76.7
CAN.G323.4 Capsicum annuum HOM05D000718 ORTHO05D013272 5.7e-17 92.0 52 82.7
CAN.G291.4 Capsicum annuum HOM05D000718 ORTHO05D013272 2.8e-16 89.7 50 84.0
CAN.G766.5 Capsicum annuum HOM05D000718 ORTHO05D013272 8.2e-16 88.2 52 80.8
CAN.G904.36 Capsicum annuum HOM05D000718 ORTHO05D003905 1.2e-14 84.3 44 86.4
Nitab4.5_0006953g0030 Nicotiana tabacum HOM05D000718 ORTHO05D003905 1.4e-12 77.4 56 62.5
PGSC0003DMG401021263 Solanum tuberosum HOM05D000718 ORTHO05D003905 3.2e-12 76.3 43 81.4
Nitab4.5_0003565g0030 Nicotiana tabacum HOM05D000718 ORTHO05D003905 4.2e-12 75.9 59 64.4
Solyc10g007330.1 Solanum lycopersicum HOM05D000718 ORTHO05D003905 4.2e-12 75.9 59 66.1
Sopen10g003140 Solanum pennellii HOM05D000718 ORTHO05D003905 4.2e-12 75.9 59 66.1
PGSC0003DMG400007072 Solanum tuberosum HOM05D000718 ORTHO05D003905 2.1e-11 73.6 43 79.1
CAN.G375.13 Capsicum annuum HOM05D000718 ORTHO05D003905 2.7e-11 73.2 40 82.5
Peaxi162Scf00111g01413 Petunia axillaris HOM05D000718 ORTHO05D003905 4.7e-11 72.4 43 76.7
CSS0038708 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D003905 7.9e-11 71.6 43 76.7
Oeu031031.1 Olea europaea HOM05D000718 ORTHO05D003905 7.9e-11 71.6 43 74.4
Peaxi162Scf00692g00513 Petunia axillaris HOM05D000718 ORTHO05D003905 1.0e-10 71.2 40 80.0
COL.COLO4_17553 Corchorus olitorius HOM05D000718 ORTHO05D003905 2.3e-10 70.1 44 68.2
Dinv14993 Davidia involucrata HOM05D000718 ORTHO05D003905 2.3e-10 70.1 40 75.0
Solyc12g014270.3 Solanum lycopersicum HOM05D000718 ORTHO05D003905 3.9e-10 69.3 43 69.8
PGSC0003DMG400015387 Solanum tuberosum HOM05D000718 ORTHO05D003905 3.9e-10 69.3 43 69.8
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 5.1e-10 68.9 40 77.5
Dinv18363 Davidia involucrata HOM05D000718 ORTHO05D003905 8.8e-10 68.2 40 72.5
Nitab4.5_0000035g0180 Nicotiana tabacum HOM05D000718 ORTHO05D003905 8.8e-10 68.2 56 57.1
Nitab4.5_0021759g0010 Nicotiana tabacum HOM05D000718 ORTHO05D003905 8.8e-10 68.2 43 69.8
Sopen12g006060 Solanum pennellii HOM05D000718 ORTHO05D003905 1.1e-09 67.8 43 67.4
Peaxi162Scf00122g00181 Petunia axillaris HOM05D000718 ORTHO05D003905 1.5e-09 67.4 43 67.4
Gorai.002G060900 Gossypium raimondii HOM05D000718 ORTHO05D003905 2.0e-09 67.0 51 60.8
MBI06_g08604_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D003905 2.6e-09 66.6 49 63.3
Cpa.g.c30496 Carica papaya HOM05D000718 ORTHO05D003905 3.3e-09 66.2 39 71.8
MELO3C025638.2 Cucumis melo HOM05D000718 ORTHO05D003905 3.3e-09 66.2 44 65.9
CsaV3_4G033130 Cucumis sativus L. HOM05D000718 ORTHO05D003905 3.3e-09 66.2 44 65.9
Gohir.A01G055000 Gossypium hirsutum HOM05D000718 ORTHO05D003905 3.3e-09 66.2 49 61.2
Gohir.A13G149401 Gossypium hirsutum HOM05D000718 ORTHO05D003905 3.3e-09 66.2 46 65.2
Gohir.D13G153800 Gossypium hirsutum HOM05D000718 ORTHO05D003905 3.3e-09 66.2 46 65.2
Gorai.013G173800 Gossypium raimondii HOM05D000718 ORTHO05D003905 3.3e-09 66.2 46 65.2
HanXRQChr13g0390381 Helianthus annuus HOM05D000718 ORTHO05D003905 4.4e-09 65.9 39 69.2
Atru.chr2.2150 Acer truncatum HOM05D000718 ORTHO05D003905 5.7e-09 65.5 43 67.4
MSTRG.14962 Avicennia marina HOM05D000718 ORTHO05D003905 5.7e-09 65.5 40 70.0
Gohir.D01G042754 Gossypium hirsutum HOM05D000718 ORTHO05D003905 5.7e-09 65.5 49 61.2
TWI39G1238 Tripterygium wilfordii HOM05D000718 ORTHO05D003905 5.7e-09 65.5 48 60.4
vmacro11936 Vaccinium macrocarpon HOM05D000718 ORTHO05D003905 5.7e-09 65.5 39 74.4
vmacro23383 Vaccinium macrocarpon HOM05D000718 ORTHO05D003905 5.7e-09 65.5 39 74.4
Cc05_g11100 Coffea canephora HOM05D000718 ORTHO05D003905 7.4e-09 65.1 39 71.8
Duzib213G0085 Durio zibethinus HOM05D000718 ORTHO05D003905 7.4e-09 65.1 39 71.8
Duzib268G1121 Durio zibethinus HOM05D000718 ORTHO05D003905 7.4e-09 65.1 39 71.8
MD08G1248900 Malus domestica HOM05D000718 ORTHO05D003905 7.4e-09 65.1 43 62.8
TWI38G1158 Tripterygium wilfordii HOM05D000718 ORTHO05D003905 7.4e-09 65.1 39 71.8
ClCG11G017470 Citrullus lanatus HOM05D000718 ORTHO05D003905 9.7e-09 64.7 46 60.9
HanXRQChr15g0476221 Helianthus annuus HOM05D000718 ORTHO05D003905 9.7e-09 64.7 42 66.7
Sabra11G0097100 Salix brachista HOM05D000718 ORTHO05D003905 9.7e-09 64.7 42 69.0
MSTRG.6676 Avicennia marina HOM05D000718 ORTHO05D003905 1.3e-08 64.3 39 69.2
FAN21G2233 Fragaria x ananassa HOM05D000718 ORTHO05D003905 1.3e-08 64.3 39 71.8
FAN25G3621 Fragaria x ananassa HOM05D000718 ORTHO05D003905 1.3e-08 64.3 39 71.8
Sc16g0007560 Simmondsia chinensis HOM05D000718 ORTHO05D003905 1.3e-08 64.3 46 60.9
Migut.M00729 Erythranthe guttata HOM05D000718 ORTHO05D003905 1.7e-08 63.9 51 60.8
Rhsim06G0207700 Rhododendron simsii HOM05D000718 ORTHO05D003905 1.7e-08 63.9 39 71.8
Thecc.07G110800 Theobroma cacao HOM05D000718 ORTHO05D003905 1.7e-08 63.9 39 69.2
Haze_09325 Corylus avellana HOM05D000718 ORTHO05D003905 2.2e-08 63.5 44 63.6
Lj8A148G36 Lonicera japonica HOM05D000718 ORTHO05D003905 2.2e-08 63.5 39 69.2
Nn1g04431 Nelumbo nucifera HOM05D000718 ORTHO05D003905 2.2e-08 63.5 43 62.8
Potri.011G109700 Populus trichocarpa HOM05D000718 ORTHO05D003905 2.2e-08 63.5 42 66.7
Sed0022037 Sechium edule HOM05D000718 ORTHO05D003905 2.2e-08 63.5 43 62.8
FvH4_3g18311 Fragaria vesca HOM05D000718 ORTHO05D003905 2.8e-08 63.2 39 71.8
FAN11G1179 Fragaria x ananassa HOM05D000718 ORTHO05D003905 2.8e-08 63.2 39 71.8
Gohir.D11G305512 Gossypium hirsutum HOM05D000718 ORTHO05D003905 2.8e-08 63.2 52 55.8
Lj1P830T16 Lonicera japonica HOM05D000718 ORTHO05D003905 2.8e-08 63.2 40 70.0
MD16G1147200 Malus domestica HOM05D000718 ORTHO05D003905 2.8e-08 63.2 43 60.5
CANSAT35G0358 Cannabis sativa HOM05D000718 ORTHO05D003905 3.7e-08 62.8 60 50.0
CAN.G1119.2 Capsicum annuum HOM05D000718 ORTHO05D003905 3.7e-08 62.8 47 76.6
MBI07_g09572_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D003905 3.7e-08 62.8 46 58.7
QL04p083602 Quercus lobata HOM05D000718 ORTHO05D003905 3.7e-08 62.8 39 69.2
Thecc.07G111100 Theobroma cacao HOM05D000718 ORTHO05D003905 3.7e-08 62.8 39 69.2
GSVIVG01014200001 Vitis vinifera HOM05D000718 ORTHO05D002712 3.7e-08 62.8 49 57.1
CSS0001779 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D003905 4.8e-08 62.4 43 65.1
Rhsim04G0026200 Rhododendron simsii HOM05D000718 ORTHO05D003905 4.8e-08 62.4 39 66.7
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 6.3e-08 62.0 39 71.8
DCAR_017171 Daucus carota HOM05D000718 ORTHO05D003905 6.3e-08 62.0 50 58.0
Gorai.007G326900 Gossypium raimondii HOM05D000718 ORTHO05D003905 6.3e-08 62.0 58 50.0
Lsat_1_v5_gn_9_100000 Lactuca sativa HOM05D000718 ORTHO05D003905 6.3e-08 62.0 39 69.2
Thecc.07G111200 Theobroma cacao HOM05D000718 ORTHO05D003905 6.3e-08 62.0 42 64.3
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 8.2e-08 61.6 39 71.8
Ciclev10023870m.g Citrus clementina HOM05D000718 ORTHO05D003905 8.2e-08 61.6 39 71.8
MD03G1242900 Malus domestica HOM05D000718 ORTHO05D003905 8.2e-08 61.6 39 66.7
MD03G1243400 Malus domestica HOM05D000718 ORTHO05D003905 8.2e-08 61.6 39 66.7
PGR031G3118 Punica granatum HOM05D000718 ORTHO05D003905 8.2e-08 61.6 39 69.2
QL02p094759 Quercus lobata HOM05D000718 ORTHO05D003905 8.2e-08 61.6 39 66.7
TWI39G1231 Tripterygium wilfordii HOM05D000718 ORTHO05D003905 8.2e-08 61.6 39 66.7
TAR627G0128 Trochodendron aralioides HOM05D000718 ORTHO05D003905 8.2e-08 61.6 39 66.7
Eucgr.F03269 Eucalyptus grandis HOM05D000718 ORTHO05D003905 1.1e-07 61.2 39 61.5
QL02p094741 Quercus lobata HOM05D000718 ORTHO05D003905 1.1e-07 61.2 39 66.7
TAR624G0221 Trochodendron aralioides HOM05D000718 ORTHO05D003905 1.1e-07 61.2 39 66.7
A03p39050 Brassica napus HOM05D000718 ORTHO05D003905 1.4e-07 60.8 61 50.8
BraA03t13054Z Brassica rapa HOM05D000718 ORTHO05D003905 1.4e-07 60.8 61 50.8
DCAR_013154 Daucus carota HOM05D000718 ORTHO05D003905 1.4e-07 60.8 47 57.4
Eucgr.F03273 Eucalyptus grandis HOM05D000718 ORTHO05D003905 1.4e-07 60.8 39 64.1
Prupe.4G164900 Prunus persica HOM05D000718 ORTHO05D003905 1.4e-07 60.8 39 64.1
RcHm_v2.0_Chr5g0030961 Rosa chinensis HOM05D000718 ORTHO05D003905 1.4e-07 60.8 39 64.1
SGA_v2.0_scaffold70G23378 Striga asiatica HOM05D000718 ORTHO05D003905 1.4e-07 60.8 42 61.9
vmacro09494 Vaccinium macrocarpon HOM05D000718 ORTHO05D003905 1.4e-07 60.8 44 63.6
Ca_23001_v3 Cicer arietinum L. HOM05D000718 ORTHO05D003905 1.8e-07 60.5 41 61.0
MD03G1243300 Malus domestica HOM05D000718 ORTHO05D003905 1.8e-07 60.5 39 66.7
Manes.03G101300 Manihot esculenta HOM05D000718 ORTHO05D003905 1.8e-07 60.5 39 66.7
RcHm_v2.0_Chr5g0030951 Rosa chinensis HOM05D000718 ORTHO05D003905 1.8e-07 60.5 39 66.7
vmacro14648 Vaccinium macrocarpon HOM05D000718 ORTHO05D003905 1.8e-07 60.5 39 66.7
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 2.4e-07 60.1 39 66.7
ATR0602G054 Amborella trichopoda HOM05D000718 ORTHO05D003905 2.4e-07 60.1 43 62.8
CiPaw.12G113500 Carya illinoinensis HOM05D000718 ORTHO05D003905 2.4e-07 60.1 39 61.5
Lalb_Chr19g0133791 Lupinus albus HOM05D000718 ORTHO05D003905 2.4e-07 60.1 41 61.0
Psat6g010080 Pisum sativum HOM05D000718 ORTHO05D003905 2.4e-07 60.1 42 61.9
Aa31LG8G2130 Aethionema arabicum HOM05D000718 ORTHO05D002712 3.1e-07 59.7 39 66.7
Medtr1g023030 Medicago truncatula HOM05D000718 ORTHO05D003905 3.1e-07 59.7 44 59.1
vmacro09495 Vaccinium macrocarpon HOM05D000718 ORTHO05D013272 3.1e-07 59.7 39 69.2
CANSAT35G0553 Cannabis sativa HOM05D000718 ORTHO05D003905 4.1e-07 59.3 39 66.7
Eucgr.F04473 Eucalyptus grandis HOM05D000718 ORTHO05D003905 4.1e-07 59.3 39 61.5
TPR.G30481 Trifolium pratense HOM05D000718 ORTHO05D003905 4.1e-07 59.3 41 58.5
unitig_899.g15297 Utricularia gibba HOM05D000718 ORTHO05D003905 4.1e-07 59.3 52 51.9
AT3G14920 Arabidopsis thaliana HOM05D000718 ORTHO05D003905 5.3e-07 58.9 39 64.1
Migut.H01996 Erythranthe guttata HOM05D000718 ORTHO05D003905 5.3e-07 58.9 39 64.1
FvH4_3g18320 Fragaria vesca HOM05D000718 ORTHO05D003905 5.3e-07 58.9 39 66.7
FAN16G0238 Fragaria x ananassa HOM05D000718 ORTHO05D003905 5.3e-07 58.9 39 66.7
FAN21G0298 Fragaria x ananassa HOM05D000718 ORTHO05D003905 5.3e-07 58.9 39 66.7
Nn1g09180 Nelumbo nucifera HOM05D000718 ORTHO05D003905 7.0e-07 58.5 43 55.8
QL02p094738 Quercus lobata HOM05D000718 ORTHO05D003905 7.0e-07 58.5 67 43.3
QL04p083599 Quercus lobata HOM05D000718 ORTHO05D003905 7.0e-07 58.5 67 43.3
RcHm_v2.0_Chr5g0030971 Rosa chinensis HOM05D000718 ORTHO05D003905 7.0e-07 58.5 39 61.5
THA.LOC104804736 Tarenaya hassleriana HOM05D000718 ORTHO05D003905 7.0e-07 58.5 39 61.5
Ah.04g164280 Amaranthus hybridus HOM05D000718 ORTHO05D003905 9.1e-07 58.2 39 64.1
AL3G27240 Arabidopsis lyrata HOM05D000718 ORTHO05D003905 9.1e-07 58.2 39 64.1
Gohir.A11G287641 Gossypium hirsutum HOM05D000718 ORTHO05D003905 9.1e-07 58.2 58 48.3
Psat6g010040 Pisum sativum HOM05D000718 ORTHO05D003905 9.1e-07 58.2 42 59.5
SGA_v2.0_scaffold47G17801 Striga asiatica HOM05D000718 ORTHO05D003905 9.1e-07 58.2 40 65.0
EL10Ac4g08342 Beta vulgaris HOM05D000718 ORTHO05D003905 1.2e-06 57.8 39 64.1
Thhalv10022319m.g Eutrema salsugineum HOM05D000718 ORTHO05D002712 1.2e-06 57.8 39 61.5
Lj3g0020389 Lotus japonicus HOM05D000718 ORTHO05D003905 1.2e-06 57.8 41 61.0
MBI07_g35375_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D003905 1.2e-06 57.8 46 58.7
Atru.chr2.2149 Acer truncatum HOM05D000718 ORTHO05D003905 1.5e-06 57.4 43 53.5
Lj3g0017131 Lotus japonicus HOM05D000718 ORTHO05D003905 1.5e-06 57.4 41 63.4
PSO229G0130 Papaver somniferum HOM05D000718 ORTHO05D003905 1.5e-06 57.4 39 59.0
PSO339G4450 Papaver somniferum HOM05D000718 ORTHO05D003905 1.5e-06 57.4 42 59.5
PSO675G2989 Papaver somniferum HOM05D000718 ORTHO05D003905 1.5e-06 57.4 39 59.0
Thecc.07G110900 Theobroma cacao HOM05D000718 ORTHO05D013272 1.5e-06 57.4 39 61.5
ECA240G0560 Erigeron canadensis HOM05D000718 ORTHO05D003905 2.0e-06 57.0 39 64.1
Manes.15G094700 Manihot esculenta HOM05D000718 ORTHO05D003905 2.0e-06 57.0 39 66.7
TPR.G8087 Trifolium pratense HOM05D000718 ORTHO05D003905 2.0e-06 57.0 49 53.1
C03p47320 Brassica napus HOM05D000718 ORTHO05D003905 3.5e-06 56.2 39 61.5
BolC3t17002H Brassica oleracea HOM05D000718 ORTHO05D003905 3.5e-06 56.2 39 61.5
VMungo1127G1811 Vigna mungo HOM05D000718 ORTHO05D003905 3.5e-06 56.2 39 59.0
Aqoxy1G02040 Aquilegia oxysepala HOM05D000718 ORTHO05D003905 4.5e-06 55.8 43 53.5
CSS0040392 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D003905 5.9e-06 55.5 39 64.1
Glyma.06G228800 Glycine max HOM05D000718 ORTHO05D003905 5.9e-06 55.5 39 56.4
Glyma.12G157500 Glycine max HOM05D000718 ORTHO05D003905 5.9e-06 55.5 39 56.4
Gohir.D13G153900 Gossypium hirsutum HOM05D000718 ORTHO05D003905 5.9e-06 55.5 39 59.0
Medtr1g023035 Medicago truncatula HOM05D000718 ORTHO05D003905 7.7e-06 55.1 41 58.5


User provided reference genes

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