Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.1e-212 743.0 384 100.0
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 1.8e-194 682.6 390 90.8
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 6.8e-194 680.6 390 90.5
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 6.4e-192 674.1 390 89.5
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 5.6e-188 661.0 389 88.2
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.8e-186 656.0 389 87.4
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 5.6e-164 581.3 391 78.3
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 4.5e-161 571.6 386 77.7
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 3.0e-157 558.9 390 75.9
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 2.5e-148 529.3 391 71.1
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 4.8e-147 525.0 391 71.1
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 3.4e-145 518.8 390 69.5
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 5.9e-145 518.1 391 69.6
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 5.9e-145 518.1 390 69.5
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 1.4e-143 513.5 392 68.1
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 3.2e-143 512.3 384 68.2
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 1.0e-141 507.3 394 67.3
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 1.8e-141 506.5 384 67.7
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 1.8e-141 506.5 391 68.3
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 3.0e-141 505.8 391 67.5
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 1.1e-140 503.8 389 68.4
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.8e-138 496.5 391 67.5
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 3.1e-138 495.7 391 66.2
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 3.1e-138 495.7 391 66.0
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 5.3e-138 495.0 391 67.0
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 6.9e-138 494.6 391 66.8
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 9.1e-138 494.2 391 66.2
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 1.5e-137 493.4 392 66.3
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 2.0e-137 493.0 384 68.0
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 3.4e-137 492.3 457 60.0
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 4.5e-137 491.9 391 65.7
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 5.9e-137 491.5 390 66.7
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 7.7e-137 491.1 384 66.9
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 1.0e-136 490.7 389 65.8
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 2.2e-136 489.6 387 66.1
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 2.2e-136 489.6 391 65.5
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 3.2e-135 485.7 390 64.4
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 5.5e-135 485.0 391 64.5
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 7.2e-135 484.6 388 66.0
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 1.4e-133 480.3 390 66.2
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 2.3e-133 479.6 391 65.5
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 2.3e-133 479.6 391 65.2
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 2.3e-133 479.6 390 65.4
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 3.0e-133 479.2 391 64.7
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 3.9e-133 478.8 391 64.7
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.0e-132 476.5 376 66.8
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 2.2e-131 473.0 390 64.6
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 2.8e-131 472.6 384 65.1
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.4e-130 470.3 391 63.7
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.8e-130 469.9 390 63.8
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.4e-130 469.5 394 64.5
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 7.0e-130 468.0 394 64.2
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 1.2e-129 467.2 390 64.6
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 1.2e-129 467.2 391 63.9
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 1.7e-128 463.4 386 64.5
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 1.7e-128 463.4 403 62.0
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.2e-128 463.0 371 65.8
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 5.0e-128 461.8 390 63.1
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 8.5e-128 461.1 390 63.6
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 1.1e-127 460.7 375 65.3
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.9e-127 459.9 371 65.0
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.7e-126 456.1 389 64.5
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 3.6e-126 455.7 391 61.4
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 6.1e-126 454.9 390 61.3
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 2.3e-125 453.0 391 62.1
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 2.3e-125 453.0 391 62.4
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 3.0e-125 452.6 391 61.6
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 6.7e-125 451.4 387 62.3
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 6.7e-125 451.4 387 62.3
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 6.7e-125 451.4 388 61.6
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 8.8e-125 451.1 387 61.5
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 1.1e-124 450.7 387 61.8
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 2.6e-124 449.5 386 62.2
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 9.7e-124 447.6 386 61.4
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.8e-123 446.0 390 61.5
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 4.8e-123 445.3 392 60.7
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.4e-122 443.7 379 62.0
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 2.4e-122 443.0 390 61.3
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 4.1e-122 442.2 388 59.8
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 5.3e-122 441.8 392 59.9
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 7.0e-122 441.4 427 58.8
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 7.0e-122 441.4 384 60.2
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 9.1e-122 441.0 387 61.2
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.2e-121 440.7 386 61.4
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 3.5e-121 439.1 386 60.4
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 5.9e-121 438.3 385 60.0
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.0e-120 437.6 384 61.5
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 1.0e-120 437.6 382 60.2
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.3e-120 437.2 380 61.6
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.7e-120 436.8 386 59.6
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.7e-120 436.8 387 61.2
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 1.5e-119 433.7 385 61.6
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 2.5e-119 433.0 386 59.1
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 2.5e-119 433.0 386 59.1
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.6e-118 430.3 388 58.0
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 4.7e-118 428.7 385 59.5
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 8.0e-118 427.9 394 58.6
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 2.3e-117 426.4 386 58.0
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 2.3e-117 426.4 386 58.0
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 2.3e-117 426.4 386 58.0
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 1.5e-116 423.7 392 57.9
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 2.8e-115 419.5 389 56.6
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.1e-114 417.5 343 64.1
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 2.9e-112 409.5 338 64.8
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 3.2e-111 406.0 393 55.2
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 1.1e-103 380.9 386 51.6
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 8.0e-102 374.8 381 53.3
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 3.2e-98 362.8 391 52.9
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 4.1e-98 362.5 325 60.9
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 1.2e-92 344.4 399 49.6
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.7e-91 340.5 267 65.5
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.2e-89 334.3 315 55.2
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 7.3e-87 325.1 247 68.8
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 1.1e-85 321.2 276 62.7
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 3.1e-85 319.7 276 62.7
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 3.2e-82 309.7 397 44.1
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 4.3e-79 299.3 219 71.7
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 8.9e-77 291.6 391 41.7
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.2e-76 291.2 291 53.3
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 3.2e-74 283.1 232 62.1
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 6.9e-69 265.4 387 39.5
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 7.8e-65 251.9 184 72.8
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 3.9e-64 249.6 272 51.1
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 4.8e-62 242.7 387 38.0
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 2.6e-60 236.9 246 55.7
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 1.2e-57 228.0 484 35.3
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 3.0e-56 223.4 176 63.1
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 2.4e-53 213.8 158 74.7
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.1e-53 213.4 241 53.5
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 1.1e-42 178.3 140 65.7
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 6.7e-40 169.1 145 64.1
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.0e-35 155.2 129 61.2
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.9e-31 141.0 109 67.0
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 6.3e-30 136.0 96 71.9
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 7.7e-28 129.0 109 60.6
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 3.6e-25 120.2 108 62.0
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 3.6e-25 120.2 108 62.0
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 1.4e-21 108.2 69 82.6
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.0e-19 102.1 126 46.8
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 1.2e-17 95.1 68 63.2
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 5.7e-15 86.3 75 65.3
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 1.7e-14 84.7 106 40.6
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 2.8e-14 84.0 101 54.5
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 8.2e-14 82.4 57 66.7
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 7.0e-13 79.3 161 37.9
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 1.6e-12 78.2 70 61.4
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 4.2e-10 70.1 64 54.7
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 3.6e-09 67.0 155 34.2
Cre06.g302850 Chlamydomonas reinhardtii HOM05D004816 ORTHO05D006043 1.4e-08 65.1 239 25.5
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 5.2e-08 63.2 160 33.8
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.2e-06 57.8 55 60.0


User provided reference genes

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