Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G322.69 Capsicum annuum HOM05D000224 ORTHO05D115293 7.7e-61 236.9 113 100.0
Nitab4.5_0012282g0020 Nicotiana tabacum HOM05D000224 ORTHO05D000337 2.3e-17 92.4 57 73.7
Solyc01g108740.3 Solanum lycopersicum HOM05D000224 ORTHO05D000337 1.5e-16 89.7 69 63.8
Sopen01g050940 Solanum pennellii HOM05D000224 ORTHO05D000337 1.5e-16 89.7 69 63.8
CAN.G322.45 Capsicum annuum HOM05D000224 ORTHO05D000337 4.4e-16 88.2 59 71.2
PGSC0003DMG400025905 Solanum tuberosum HOM05D000224 ORTHO05D000337 4.4e-16 88.2 58 72.4
PGSC0003DMG400025907 Solanum tuberosum HOM05D000224 ORTHO05D000337 4.4e-16 88.2 57 71.9
Sopen01g050960 Solanum pennellii HOM05D000224 ORTHO05D000337 5.8e-16 87.8 57 70.2
CAN.G322.48 Capsicum annuum HOM05D000224 ORTHO05D000337 8.3e-15 84.0 58 70.7
Nitab4.5_0001401g0130 Nicotiana tabacum HOM05D000224 ORTHO05D000337 8.3e-15 84.0 57 66.7
Solyc01g108680.4 Solanum lycopersicum HOM05D000224 ORTHO05D000337 1.1e-14 83.6 76 56.6
PGSC0003DMG400005450 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.1e-14 83.6 57 64.9
PGSC0003DMG400010729 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.1e-14 83.6 58 69.0
PGSC0003DMG400025917 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.1e-14 83.6 58 69.0
PGSC0003DMG400025825 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.4e-14 83.2 59 64.4
PGSC0003DMG401005446 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.9e-14 82.8 57 63.2
Solyc01g108810.3 Solanum lycopersicum HOM05D000224 ORTHO05D000337 2.4e-14 82.4 68 55.9
PGSC0003DMG400010730 Solanum tuberosum HOM05D000224 ORTHO05D000337 2.4e-14 82.4 57 63.2
Nitab4.5_0003726g0100 Nicotiana tabacum HOM05D000224 ORTHO05D000337 4.1e-14 81.6 57 63.2
PGSC0003DMG402025920 Solanum tuberosum HOM05D000224 ORTHO05D000337 4.1e-14 81.6 57 63.2
CAN.G322.55 Capsicum annuum HOM05D000224 ORTHO05D000337 5.4e-14 81.3 57 63.2
CAN.G322.58 Capsicum annuum HOM05D000224 ORTHO05D000337 5.4e-14 81.3 69 58.0
Peaxi162Scf00016g01421 Petunia axillaris HOM05D000224 ORTHO05D000337 7.0e-14 80.9 125 41.6
Sopen01g051020 Solanum pennellii HOM05D000224 ORTHO05D000337 9.2e-14 80.5 58 67.2
PGSC0003DMG400025909 Solanum tuberosum HOM05D000224 ORTHO05D000337 9.2e-14 80.5 68 58.8
Solyc01g108780.4 Solanum lycopersicum HOM05D000224 ORTHO05D000337 1.2e-13 80.1 68 55.9
Nitab4.5_0001401g0090 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.6e-13 79.7 57 61.4
PGSC0003DMG403025920 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.6e-13 79.7 57 61.4
CAN.G322.44 Capsicum annuum HOM05D000224 ORTHO05D000337 2.0e-13 79.3 57 64.9
Sopen01g050980 Solanum pennellii HOM05D000224 ORTHO05D000337 4.6e-13 78.2 68 54.4
PGSC0003DMG400044108 Solanum tuberosum HOM05D000224 ORTHO05D000337 4.6e-13 78.2 55 67.3
CAN.G322.53 Capsicum annuum HOM05D000224 ORTHO05D000337 6.0e-13 77.8 119 40.3
Solyc07g054900.2 Solanum lycopersicum HOM05D000224 ORTHO05D000337 6.0e-13 77.8 57 61.4
Sopen07g028790 Solanum pennellii HOM05D000224 ORTHO05D000337 6.0e-13 77.8 57 61.4
Peaxi162Scf00016g01420 Petunia axillaris HOM05D000224 ORTHO05D000337 1.0e-12 77.0 116 41.4
CAN.G322.62 Capsicum annuum HOM05D000224 ORTHO05D000337 1.3e-12 76.6 57 59.6
Sopen01g051010 Solanum pennellii HOM05D000224 ORTHO05D000337 1.3e-12 76.6 56 58.9
Sopen01g050970 Solanum pennellii HOM05D000224 ORTHO05D000337 1.7e-12 76.3 57 63.2
PGSC0003DMG401025906 Solanum tuberosum HOM05D000224 ORTHO05D000337 3.9e-12 75.1 57 59.6
PGSC0003DMG400025914 Solanum tuberosum HOM05D000224 ORTHO05D000337 5.0e-12 74.7 58 60.3
PGSC0003DMG401025908 Solanum tuberosum HOM05D000224 ORTHO05D000337 6.6e-12 74.3 59 66.1
Solyc01g108820.1 Solanum lycopersicum HOM05D000224 ORTHO05D000337 1.1e-11 73.6 68 50.0
Solyc01g108750.2 Solanum lycopersicum HOM05D000224 ORTHO05D000337 1.5e-11 73.2 57 59.6
Sopen01g050950 Solanum pennellii HOM05D000224 ORTHO05D000337 1.5e-11 73.2 57 59.6
PGSC0003DMG402025906 Solanum tuberosum HOM05D000224 ORTHO05D000337 1.5e-11 73.2 57 61.4
CAN.G322.51 Capsicum annuum HOM05D000224 ORTHO05D000337 2.5e-11 72.4 57 57.9
CAN.G322.54 Capsicum annuum HOM05D000224 ORTHO05D000337 2.5e-11 72.4 57 57.9
PGSC0003DMG402025908 Solanum tuberosum HOM05D000224 ORTHO05D000337 2.5e-11 72.4 59 66.1
CAN.G680.5 Capsicum annuum HOM05D000224 ORTHO05D000337 3.3e-11 72.0 57 59.6
CAN.G322.46 Capsicum annuum HOM05D000224 ORTHO05D000337 1.2e-10 70.1 56 60.7
CAN.G322.47 Capsicum annuum HOM05D000224 ORTHO05D000337 2.1e-10 69.3 57 56.1
CAN.G322.52 Capsicum annuum HOM05D000224 ORTHO05D000337 2.1e-10 69.3 57 56.1
CAN.G322.67 Capsicum annuum HOM05D000224 ORTHO05D000337 2.8e-10 68.9 66 48.5
PGSC0003DMG400025916 Solanum tuberosum HOM05D000224 ORTHO05D000337 2.8e-10 68.9 56 55.4
PGSC0003DMG400026617 Solanum tuberosum HOM05D000224 ORTHO05D000337 2.8e-10 68.9 70 48.6
PGSC0003DMG400025910 Solanum tuberosum HOM05D000224 ORTHO05D000337 4.7e-10 68.2 59 57.6
Sopen09g007930 Solanum pennellii HOM05D000224 ORTHO05D000337 6.2e-10 67.8 70 48.6
CAN.G322.56 Capsicum annuum HOM05D000224 ORTHO05D000337 8.1e-10 67.4 64 53.1
arahy.Tifrunner.gnm1.ann1.LP72HD Arachis hypogaea HOM05D000224 ORTHO05D000337 1.1e-09 67.0 59 50.8
Actinidia00467 Actinidia chinensis HOM05D000224 ORTHO05D000337 1.8e-09 66.2 69 50.7
CAN.G363.30 Capsicum annuum HOM05D000224 ORTHO05D000337 1.8e-09 66.2 57 56.1
MD05G1074300 Malus domestica HOM05D000224 ORTHO05D000337 2.3e-09 65.9 57 56.1
AUR62011418 Chenopodium quinoa HOM05D000224 ORTHO05D000337 3.1e-09 65.5 62 48.4
CANSAT25G1345 Cannabis sativa HOM05D000224 ORTHO05D000337 4.0e-09 65.1 57 54.4
COL.COLO4_11729 Corchorus olitorius HOM05D000018 ORTHO05D001172 4.0e-09 65.1 57 54.4
Prupe.8G115000 Prunus persica HOM05D000224 ORTHO05D000337 4.0e-09 65.1 62 53.2
PGSC0003DMG400025912 Solanum tuberosum HOM05D000224 ORTHO05D000337 4.0e-09 65.1 57 52.6
Eucgr.I01196 Eucalyptus grandis HOM05D000224 ORTHO05D000337 5.2e-09 64.7 57 54.4
FAN27G3334 Fragaria x ananassa HOM05D000224 ORTHO05D000337 5.2e-09 64.7 59 54.2
Gohir.D12G026200 Gossypium hirsutum HOM05D000224 ORTHO05D000337 5.2e-09 64.7 64 51.6
Gorai.008G026500 Gossypium raimondii HOM05D000224 ORTHO05D000337 5.2e-09 64.7 64 51.6
PGSC0003DMG400025918 Solanum tuberosum HOM05D000224 ORTHO05D000337 5.2e-09 64.7 59 54.2
GSVIVG01031833001 Vitis vinifera HOM05D000224 ORTHO05D000337 5.2e-09 64.7 62 53.2
CAN.G322.49 Capsicum annuum HOM05D000224 ORTHO05D000337 6.8e-09 64.3 57 52.6
CAN.G322.66 Capsicum annuum HOM05D000224 ORTHO05D000337 6.8e-09 64.3 57 52.6
Solyc09g014970.4 Solanum lycopersicum HOM05D000224 ORTHO05D000337 6.8e-09 64.3 70 47.1
TAR625G1073 Trochodendron aralioides HOM05D000224 ORTHO05D000337 6.8e-09 64.3 57 54.4
GSVIVG01031813001 Vitis vinifera HOM05D000224 ORTHO05D000337 6.8e-09 64.3 62 53.2
Duzib132G1039 Durio zibethinus HOM05D000224 ORTHO05D000337 8.9e-09 63.9 59 54.2
PGR142G1559 Punica granatum HOM05D000224 ORTHO05D000337 8.9e-09 63.9 57 56.1
CAN.G322.63 Capsicum annuum HOM05D000224 ORTHO05D000337 1.5e-08 63.2 47 63.8
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.5e-08 63.2 57 56.1
CSS0020526 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D000337 2.0e-08 62.8 69 46.4
Sc08g0000190 Simmondsia chinensis HOM05D000224 ORTHO05D000337 2.0e-08 62.8 57 52.6
Thecc.02G094500 Theobroma cacao HOM05D000224 ORTHO05D000337 2.0e-08 62.8 59 50.8
GSVIVG01031817001 Vitis vinifera HOM05D000224 ORTHO05D000337 2.0e-08 62.8 62 51.6
GSVIVG01031824001 Vitis vinifera HOM05D000224 ORTHO05D000337 2.0e-08 62.8 62 51.6
CiPaw.06G140800 Carya illinoinensis HOM05D000224 ORTHO05D000337 2.6e-08 62.4 62 48.4
Gohir.A12G026700 Gossypium hirsutum HOM05D000224 ORTHO05D000337 2.6e-08 62.4 62 50.0
Prupe.8G115300 Prunus persica HOM05D000224 ORTHO05D000337 2.6e-08 62.4 62 51.6
arahy.Tifrunner.gnm1.ann1.CH3WPF Arachis hypogaea HOM05D000224 ORTHO05D000337 4.4e-08 61.6 59 49.2
Eucgr.I01184 Eucalyptus grandis HOM05D000224 ORTHO05D000337 4.4e-08 61.6 57 52.6
Potri.009G107200 Populus trichocarpa HOM05D000224 ORTHO05D000337 4.4e-08 61.6 57 52.6
arahy.Tifrunner.gnm1.ann1.4J2USK Arachis hypogaea HOM05D000224 ORTHO05D000337 5.8e-08 61.2 56 50.0
EL10Ac9g21809 Beta vulgaris HOM05D000224 ORTHO05D000337 5.8e-08 61.2 57 49.1
QL11p038697 Quercus lobata HOM05D000224 ORTHO05D000337 5.8e-08 61.2 57 52.6
Eucgr.I01198 Eucalyptus grandis HOM05D000224 ORTHO05D000337 7.5e-08 60.8 57 52.6
TWI31G0375 Tripterygium wilfordii HOM05D000224 ORTHO05D000337 7.5e-08 60.8 62 50.0
Ah.01g020000 Amaranthus hybridus HOM05D000224 ORTHO05D000337 9.9e-08 60.5 58 53.4
Eucgr.L02277 Eucalyptus grandis HOM05D000224 ORTHO05D000337 9.9e-08 60.5 57 50.9
Ciclev10028977m.g Citrus clementina HOM05D000224 ORTHO05D000337 1.3e-07 60.1 57 50.9
RcHm_v2.0_Chr6g0259411 Rosa chinensis HOM05D000224 ORTHO05D000337 1.7e-07 59.7 46 60.9
arahy.Tifrunner.gnm1.ann1.ZD80WJ Arachis hypogaea HOM05D000224 ORTHO05D000337 2.9e-07 58.9 56 51.8
Cc02_g18340 Coffea canephora HOM05D000224 ORTHO05D000337 2.9e-07 58.9 57 50.9
FvH4_1g14930 Fragaria vesca HOM05D000224 ORTHO05D000337 2.9e-07 58.9 57 43.9
QL11p038700 Quercus lobata HOM05D000224 ORTHO05D000337 2.9e-07 58.9 57 52.6
PGSC0003DMG400025911 Solanum tuberosum HOM05D000224 ORTHO05D000337 3.7e-07 58.5 57 45.6
Gohir.A12G026600 Gossypium hirsutum HOM05D000224 ORTHO05D000337 4.9e-07 58.2 59 49.2
Sabra07G0033000 Salix brachista HOM05D000224 ORTHO05D000337 4.9e-07 58.2 84 36.9
FAN28G2533 Fragaria x ananassa HOM05D000224 ORTHO05D000337 6.4e-07 57.8 57 43.9
CAN.G322.43 Capsicum annuum HOM05D000224 ORTHO05D000337 1.1e-06 57.0 43 60.5
FAN28G0906 Fragaria x ananassa HOM05D000224 ORTHO05D000337 1.4e-06 56.6 57 43.9
Potri.009G107500 Populus trichocarpa HOM05D000224 ORTHO05D000337 1.4e-06 56.6 57 47.4
QL06p043705 Quercus lobata HOM05D000224 ORTHO05D000337 1.4e-06 56.6 57 43.9
Hund00313 Selenicereus undatus HOM05D000224 ORTHO05D000337 1.4e-06 56.6 62 40.3
Eucgr.I01201 Eucalyptus grandis HOM05D000224 ORTHO05D000337 1.9e-06 56.2 57 50.9
Hund01022 Selenicereus undatus HOM05D000224 ORTHO05D000337 1.9e-06 56.2 62 41.9
MSTRG.3409 Avicennia marina HOM05D000224 ORTHO05D000337 3.2e-06 55.5 58 48.3
Duzib264G0393 Durio zibethinus HOM05D000224 ORTHO05D000337 3.2e-06 55.5 58 46.6
FvH4_1g14891 Fragaria vesca HOM05D000224 ORTHO05D000337 3.2e-06 55.5 57 40.4
FAN26G1077 Fragaria x ananassa HOM05D000224 ORTHO05D000337 3.2e-06 55.5 57 40.4
MD02G1163000 Malus domestica HOM05D000224 ORTHO05D000337 3.2e-06 55.5 57 47.4
Potri.007G036800 Populus trichocarpa HOM05D000224 ORTHO05D000337 3.2e-06 55.5 57 43.9
AUR62011419 Chenopodium quinoa HOM05D000224 ORTHO05D000337 4.1e-06 55.1 57 47.4
FAN26G1497 Fragaria x ananassa HOM05D000224 ORTHO05D000337 4.1e-06 55.1 57 40.4
MD02G1091500 Malus domestica HOM05D000224 ORTHO05D000337 4.1e-06 55.1 59 47.5
Manes.13G129900 Manihot esculenta HOM05D000224 ORTHO05D000337 4.1e-06 55.1 60 48.3
Prupe.7G141100 Prunus persica HOM05D000224 ORTHO05D000337 4.1e-06 55.1 57 47.4
QL06p043548 Quercus lobata HOM05D000224 ORTHO05D000337 4.1e-06 55.1 57 49.1
Nitab4.5_0009440g0030 Nicotiana tabacum HOM05D000224 ORTHO05D000337 5.4e-06 54.7 34 70.6
arahy.Tifrunner.gnm1.ann1.8T4BD4 Arachis hypogaea HOM05D000224 ORTHO05D000337 7.1e-06 54.3 60 46.7
Rhsim08G0107500 Rhododendron simsii HOM05D000224 ORTHO05D000337 7.1e-06 54.3 57 45.6
Rhsim08G0107600 Rhododendron simsii HOM05D000224 ORTHO05D000337 7.1e-06 54.3 57 45.6
Sabra07G0032100 Salix brachista HOM05D000224 ORTHO05D000337 7.1e-06 54.3 62 41.9
Sabra07G0032700 Salix brachista HOM05D000224 ORTHO05D000337 7.1e-06 54.3 62 41.9
Sabra07G0032800 Salix brachista HOM05D000224 ORTHO05D000337 7.1e-06 54.3 62 41.9
CAN.G322.68 Capsicum annuum HOM05D000517 ORTHO05D000751 9.2e-06 53.9 38 68.4
MD02G1162800 Malus domestica HOM05D000224 ORTHO05D000337 9.2e-06 53.9 57 47.4
Potri.007G036700 Populus trichocarpa HOM05D000224 ORTHO05D000337 9.2e-06 53.9 59 45.8
Prupe.7G141300 Prunus persica HOM05D000224 ORTHO05D000337 9.2e-06 53.9 59 45.8
QL11p038676 Quercus lobata HOM05D000224 ORTHO05D000337 9.2e-06 53.9 57 49.1
Sabra07G0033200 Salix brachista HOM05D000224 ORTHO05D000337 9.2e-06 53.9 62 41.9


User provided reference genes

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