Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 5.5e-145 517.7 276 100.0
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.8e-119 431.0 263 85.2
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.2e-118 430.3 263 85.2
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 5.7e-118 427.9 263 84.8
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 8.3e-117 424.1 273 81.3
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.6e-113 411.4 260 81.2
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.8e-110 400.6 260 78.5
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.2e-80 301.6 274 57.7
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.1e-80 301.2 274 57.7
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 3.1e-79 299.3 275 57.8
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.3e-77 293.9 272 60.7
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.4e-76 290.4 265 55.8
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.6e-75 287.0 276 56.2
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 4.6e-75 285.4 273 56.8
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 4.6e-75 285.4 274 54.7
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.1e-72 274.6 194 68.6
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 1.8e-71 273.5 272 53.7
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.8e-71 273.5 263 55.1
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.5e-70 270.4 275 52.4
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.6e-70 269.6 196 68.4
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.7e-69 266.9 273 53.1
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.7e-69 266.9 263 56.7
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.2e-69 266.5 265 52.8
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.9e-69 266.2 265 56.6
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.8e-69 265.8 265 52.8
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 8.4e-69 264.6 262 53.1
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.4e-69 264.6 262 53.1
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.4e-69 264.6 262 53.1
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-68 264.2 272 55.5
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.4e-68 263.8 265 54.7
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.4e-68 263.8 262 53.1
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 1.9e-68 263.5 265 53.2
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.4e-68 263.1 192 67.2
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.2e-68 262.7 265 52.5
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 7.1e-68 261.5 262 52.7
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 9.3e-68 261.2 268 51.9
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 2.7e-67 259.6 277 52.0
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 4.6e-67 258.8 272 51.8
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 6.0e-67 258.5 268 51.5
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 6.7e-66 255.0 277 52.0
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 6.7e-66 255.0 267 51.3
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 6.7e-66 255.0 266 53.0
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.1e-65 254.2 268 51.1
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 4.3e-65 252.3 262 51.1
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.6e-65 251.1 237 55.3
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.6e-64 250.4 269 52.0
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 2.1e-64 250.0 279 50.5
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 3.7e-64 249.2 263 52.5
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 3.7e-64 249.2 267 50.6
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 4.8e-64 248.8 262 51.5
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 6.2e-64 248.4 274 50.7
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 8.1e-64 248.1 268 50.7
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.4e-63 247.3 267 50.6
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 3.1e-63 246.1 266 51.1
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.1e-63 246.1 270 50.7
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 3.1e-63 246.1 268 51.1
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.2e-62 244.2 267 48.3
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 2.6e-62 243.0 266 50.8
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.4e-62 242.7 270 49.6
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 9.9e-62 241.1 270 51.1
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 9.9e-62 241.1 274 50.0
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.3e-61 240.7 275 49.8
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 2.2e-61 240.0 268 48.9
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.1e-60 237.7 265 52.5
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-60 236.5 249 53.4
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-60 236.5 227 54.2
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.4e-60 236.5 269 48.3
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 7.1e-60 235.0 192 62.0
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 9.3e-60 234.6 275 48.0
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.1e-59 233.4 192 61.5
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.1e-59 233.4 192 61.5
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 4.6e-59 232.3 192 60.9
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 1.3e-58 230.7 269 49.1
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.9e-58 229.2 273 46.5
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.9e-58 229.2 192 59.9
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.9e-57 226.9 238 54.2
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.9e-57 226.9 262 47.3
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 9.6e-57 224.6 268 47.0
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 4.8e-56 222.2 264 50.0
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 6.2e-56 221.9 263 49.0
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.4e-55 220.7 264 45.5
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.8e-55 220.3 273 47.3
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 5.3e-55 218.8 267 45.3
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 2.0e-54 216.9 267 48.3
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 2.6e-54 216.5 263 45.6
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 5.8e-54 215.3 265 43.4
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 7.6e-54 214.9 247 48.6
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 7.6e-54 214.9 268 45.5
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.3e-53 214.2 265 45.7
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 4.9e-53 212.2 262 46.2
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 6.5e-53 211.8 185 63.2
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 8.4e-53 211.5 263 46.4
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 5.5e-52 208.8 262 46.2
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 9.3e-52 208.0 262 45.4
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 2.1e-51 206.8 262 46.6
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 2.7e-51 206.5 276 45.7
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 4.6e-51 205.7 262 47.3
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.8e-50 203.8 266 46.6
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 2.3e-50 203.4 265 43.4
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.0e-50 203.0 262 46.6
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 8.7e-50 201.4 168 60.1
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.1e-49 201.1 262 44.7
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.5e-49 200.7 265 45.3
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.5e-49 200.7 265 45.3
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.9e-49 200.3 265 45.7
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.9e-49 200.3 265 45.7
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.9e-49 200.3 264 48.5
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 2.5e-49 199.9 262 45.4
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 3.3e-49 199.5 266 44.4
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 4.3e-49 199.1 263 43.7
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 5.7e-49 198.7 267 45.3
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 5.7e-49 198.7 267 45.3
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 5.7e-49 198.7 267 44.9
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 9.7e-49 198.0 263 45.2
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.3e-48 197.6 170 56.5
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 1.6e-48 197.2 260 43.1
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.8e-48 196.4 272 43.0
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 4.8e-48 195.7 260 45.8
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 8.2e-48 194.9 267 45.3
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 1.1e-47 194.5 268 45.5
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 3.1e-47 193.0 264 42.0
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 6.9e-47 191.8 262 40.8
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.9e-47 191.8 267 44.2
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 2.0e-46 190.3 271 41.7
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 2.6e-46 189.9 265 43.8
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 7.7e-46 188.3 260 45.8
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 7.7e-46 188.3 269 42.0
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 2.9e-45 186.4 260 43.5
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 6.1e-43 178.7 269 38.3
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.0e-42 177.9 266 42.5
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 3.0e-42 176.4 267 42.7
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 1.3e-40 171.0 264 41.3
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.5e-38 164.1 255 37.6
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 7.7e-38 161.8 264 40.2
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.7e-37 160.6 262 39.7
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.9e-36 157.1 171 49.7
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 5.5e-36 155.6 257 37.0
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.4e-36 154.8 128 59.4
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 1.2e-35 154.5 274 35.8
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 6.1e-35 152.1 133 53.4
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.9e-35 151.8 105 65.7
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.0e-34 149.8 115 60.9
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 8.8e-34 148.3 166 45.2
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 4.8e-32 142.5 116 59.5
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.2e-32 141.7 220 43.2
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 7.0e-31 138.7 150 46.7
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.2e-27 127.9 174 42.0
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 5.7e-25 119.0 117 47.9
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.7e-24 117.5 164 44.5
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.8e-23 114.0 81 69.1
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.5e-17 92.0 70 62.9
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 1.2e-14 84.7 100 41.0
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 1.3e-13 81.3 90 40.0
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.7e-13 80.9 257 30.4
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 3.8e-13 79.7 90 41.1
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 1.1e-12 78.2 292 23.3
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 2.5e-12 77.0 123 34.1
CBR_g28655 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-08 62.4 94 34.0


User provided reference genes

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