Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 0.0e+00 1458.7 720 100.0
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 0.0e+00 1261.1 725 85.4
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 0.0e+00 1231.5 725 82.9
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 0.0e+00 1224.9 710 83.7
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 0.0e+00 1195.3 725 81.8
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 0.0e+00 1169.5 630 90.2
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.8e-270 934.9 725 67.7
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 5.3e-264 914.4 696 63.8
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 5.3e-264 914.4 701 62.3
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 1.7e-262 909.4 701 64.2
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 5.1e-259 897.9 758 59.6
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 1.3e-257 893.3 701 61.1
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.6e-252 876.3 701 60.2
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.1e-252 875.9 734 59.9
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.1e-252 875.9 704 60.4
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 2.7e-252 875.5 723 59.9
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.0e-251 873.6 709 60.8
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.8e-251 872.8 702 60.7
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 3.9e-251 871.7 729 59.9
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 2.5e-250 869.0 700 61.1
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 2.5e-250 869.0 735 58.9
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.6e-249 866.3 701 60.5
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.1e-249 865.9 702 60.7
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.1e-249 865.9 734 59.8
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 2.1e-249 865.9 703 60.7
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.7e-249 865.1 734 59.7
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-248 863.6 708 60.6
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 1.1e-248 863.6 700 61.3
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 4.5e-247 858.2 662 61.9
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 5.0e-246 854.7 695 60.1
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 2.5e-245 852.4 731 60.2
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 2.1e-244 849.4 720 58.8
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 6.1e-244 847.8 721 59.5
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 5.1e-243 844.7 702 59.3
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.1e-242 843.6 704 60.5
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 3.3e-242 842.0 698 61.3
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 5.7e-242 841.3 724 58.1
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 7.4e-242 840.9 723 58.5
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.3e-241 840.1 723 59.6
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 6.3e-241 837.8 720 58.9
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.1e-240 837.0 764 54.6
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.1e-240 835.5 719 57.4
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 6.9e-240 834.3 726 58.5
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.5e-239 833.2 618 64.9
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 2.0e-239 832.8 718 58.9
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 3.4e-239 832.0 725 58.1
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.3e-238 830.1 699 57.8
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.9e-238 828.9 719 57.6
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 6.5e-238 827.8 699 58.5
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.1e-237 827.0 721 57.7
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.2e-237 825.5 719 57.3
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 3.2e-237 825.5 722 57.5
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 6.7e-235 817.8 729 56.1
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 9.7e-234 813.9 726 56.6
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 9.7e-234 813.9 698 59.5
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.2e-233 812.8 728 57.1
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 6.3e-233 811.2 700 57.9
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 9.1e-232 807.4 739 55.6
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.2e-231 807.0 700 57.4
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 5.9e-231 804.7 666 59.0
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.0e-230 803.9 701 56.6
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 1.3e-230 803.5 721 55.9
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.9e-229 799.7 657 60.0
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 4.2e-229 798.5 720 58.1
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 4.7e-228 795.0 717 55.6
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 3.9e-227 792.0 747 55.6
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 1.1e-226 790.4 724 55.2
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 1.5e-226 790.0 727 54.9
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 3.3e-226 788.9 721 56.2
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 9.7e-226 787.3 674 57.1
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 2.2e-225 786.2 652 59.8
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 4.8e-225 785.0 701 56.3
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.4e-224 783.5 722 54.7
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 2.4e-224 782.7 725 54.6
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 7.0e-224 781.2 685 56.4
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.5e-223 778.9 701 55.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 5.9e-223 778.1 707 56.4
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.3e-222 776.9 702 56.4
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 2.2e-222 776.2 702 56.4
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 3.8e-222 775.4 735 54.6
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 1.1e-221 773.9 722 53.2
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 7.2e-221 771.2 701 54.4
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 9.4e-221 770.8 707 56.3
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 7.5e-218 761.1 730 54.7
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 8.2e-217 757.7 603 61.7
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 6.5e-214 748.0 693 54.8
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 4.8e-209 731.9 747 52.1
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 8.9e-203 711.1 730 48.8
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.8e-201 706.1 731 48.4
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.4e-200 703.0 733 49.7
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.1e-197 694.1 734 49.2
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 4.6e-191 672.2 652 55.2
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.5e-186 657.1 693 48.6
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 9.5e-181 637.9 548 58.2
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 3.1e-179 632.9 687 49.9
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.6e-172 610.5 734 43.7
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 8.9e-171 604.7 593 52.3
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.7e-161 573.9 477 58.3
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 7.4e-133 478.8 524 50.6
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 3.9e-126 456.4 362 62.2
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 9.7e-125 451.8 674 38.9
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 6.5e-121 439.1 723 35.1
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.3e-116 424.9 365 57.8
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 6.3e-116 422.5 769 36.3
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 5.3e-115 419.5 677 37.1
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 2.7e-111 407.1 428 50.9
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 4.7e-111 406.4 702 33.8
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 7.0e-107 392.5 765 34.8
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.8e-102 377.9 693 33.9
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.9e-98 362.8 755 31.8
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.5e-96 358.2 344 54.7
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 2.6e-77 294.3 332 48.5
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 6.6e-73 279.6 287 53.0
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.6e-63 248.4 558 31.4
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 5.6e-56 223.4 196 55.6
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 3.6e-55 220.7 139 73.4
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-54 219.2 145 69.7
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 2.2e-52 211.5 314 37.6
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 2.4e-46 191.4 177 55.4
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 6.9e-46 189.9 166 53.6
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.1e-41 173.7 463 28.7
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.1e-33 147.1 162 43.2
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 6.9e-30 136.7 125 55.2
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.0e-26 123.6 79 70.9
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.0e-25 121.3 79 68.4
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.7e-23 114.4 75 64.0
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 4.5e-21 107.5 103 44.7
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 3.1e-14 84.7 401 24.4
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 5.0e-12 77.4 76 48.7
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 3.7e-07 61.2 87 42.5
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 6.3e-07 60.5 47 59.6
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 8.2e-07 60.1 128 34.4


User provided reference genes

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