Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 6.4e-76 287.3 146 100.0
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.5e-56 222.2 147 78.2
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 5.3e-54 214.5 147 75.5
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 7.6e-53 210.7 147 74.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 3.3e-48 195.3 149 71.8
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.4e-30 136.7 144 54.9
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 6.5e-28 127.9 135 50.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.5e-28 127.5 145 53.1
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.1e-27 127.1 144 56.2
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.9e-27 126.3 135 49.6
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.2e-27 125.6 139 51.8
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 3.2e-27 125.6 140 50.7
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 4.2e-27 125.2 144 51.4
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.6e-26 123.2 134 49.3
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 3.6e-26 122.1 145 50.3
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 4.7e-26 121.7 145 52.4
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 7.9e-26 120.9 137 49.6
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 7.9e-26 120.9 140 47.9
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.9e-26 120.9 144 49.3
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.0e-25 120.6 143 52.4
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.8e-25 119.8 147 51.0
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 3.9e-25 118.6 143 52.4
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 5.1e-25 118.2 143 49.0
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 8.8e-25 117.5 139 49.6
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.1e-24 117.1 138 51.4
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.0e-24 116.3 135 49.6
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.6e-24 115.9 140 50.0
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.6e-24 115.9 142 47.9
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 4.4e-24 115.2 147 50.3
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 4.4e-24 115.2 137 49.6
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.7e-23 113.2 148 48.6
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.8e-23 112.5 141 51.1
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 3.7e-23 112.1 141 48.9
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.8e-23 111.7 147 51.7
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.8e-23 111.7 142 50.7
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.8e-23 111.7 142 50.7
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 6.3e-23 111.3 144 48.6
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.1e-22 110.5 143 51.0
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.4e-22 110.2 142 48.6
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.8e-22 109.8 140 46.4
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 4.1e-22 108.6 147 44.2
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 5.3e-22 108.2 144 43.1
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.3e-22 108.2 142 46.5
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.3e-22 108.2 142 46.5
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 7.0e-22 107.8 147 46.9
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.5e-21 106.7 133 49.6
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 2.0e-21 106.3 140 45.0
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 2.0e-21 106.3 141 47.5
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.6e-21 105.9 140 43.6
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.6e-21 105.9 133 45.9
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 3.4e-21 105.5 137 46.7
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.7e-21 104.4 137 48.2
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.7e-21 104.4 146 43.8
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 7.7e-21 104.4 138 49.3
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.0e-20 104.0 137 49.6
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.0e-20 104.0 137 49.6
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.3e-20 103.6 150 47.3
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.3e-20 103.6 137 46.7
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.0e-20 101.7 137 48.9
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.0e-20 101.7 137 43.1
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 5.0e-20 101.7 149 43.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.5e-20 101.3 137 48.9
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 6.5e-20 101.3 140 42.9
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 6.5e-20 101.3 143 42.7
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 8.5e-20 100.9 139 41.0
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-19 100.5 146 45.2
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.1e-19 100.5 140 42.1
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.1e-19 100.5 137 45.3
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.4e-19 100.1 132 46.2
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 4.2e-19 98.6 137 44.5
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.5e-19 98.2 137 43.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.2e-19 97.8 112 48.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-18 97.1 113 47.8
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.1e-18 96.3 139 43.9
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 8.0e-18 94.4 132 43.2
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 8.0e-18 94.4 137 45.3
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.0e-17 94.0 139 43.2
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.0e-17 94.0 133 44.4
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.8e-17 93.2 147 42.9
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 3.9e-17 92.0 144 43.8
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 5.2e-17 91.7 136 42.6
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 6.7e-17 91.3 133 42.9
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 8.8e-17 90.9 139 42.4
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 8.8e-17 90.9 147 39.5
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.5e-16 90.1 134 41.8
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 2.0e-16 89.7 138 39.9
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.6e-16 89.4 136 42.6
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.6e-16 89.4 138 42.0
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 3.3e-16 89.0 140 40.7
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.3e-16 89.0 128 43.0
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 7.4e-16 87.8 144 43.1
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.3e-15 87.0 141 39.7
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.3e-15 87.0 136 41.2
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.3e-15 87.0 134 44.8
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.7e-15 86.7 134 43.3
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.7e-15 86.7 134 41.0
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.7e-15 86.7 142 41.5
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 1.7e-15 86.7 155 43.2
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 2.2e-15 86.3 134 40.3
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 2.2e-15 86.3 147 36.7
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.2e-15 86.3 132 43.9
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.2e-15 86.3 101 53.5
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 3.7e-15 85.5 134 42.5
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 4.8e-15 85.1 139 42.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 4.8e-15 85.1 139 42.4
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 4.8e-15 85.1 128 43.0
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 8.2e-15 84.3 129 43.4
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.4e-14 83.6 145 39.3
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.8e-14 83.2 142 40.8
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.8e-14 83.2 140 42.1
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-14 83.2 140 42.1
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.8e-14 83.2 137 41.6
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 2.4e-14 82.8 142 40.8
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 2.4e-14 82.8 146 39.7
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 2.4e-14 82.8 146 39.7
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 3.1e-14 82.4 134 41.0
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.1e-14 82.4 138 39.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 4.1e-14 82.0 135 42.2
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 4.1e-14 82.0 136 44.9
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 7.0e-14 81.3 137 40.1
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 9.1e-14 80.9 133 41.4
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 9.1e-14 80.9 138 40.6
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.2e-13 80.5 134 41.8
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.2e-13 80.5 134 41.8
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.6e-13 80.1 140 40.7
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.6e-13 80.1 146 43.8
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-13 79.7 132 41.7
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.0e-13 79.7 141 41.1
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 2.6e-13 79.3 141 41.1
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.9e-13 78.2 138 38.4
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.7e-12 76.6 132 40.9
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.7e-12 76.6 136 41.9
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.7e-12 76.6 145 39.3
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 2.2e-12 76.3 147 36.7
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.2e-12 76.3 136 41.9
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 3.8e-12 75.5 135 39.3
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.8e-12 75.5 175 31.4
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 6.5e-12 74.7 123 39.8
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.1e-11 73.9 132 41.7
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.1e-11 73.9 136 39.7
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.5e-11 73.6 150 36.7
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.9e-11 73.2 97 46.4
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.9e-11 73.2 97 46.4
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.5e-11 72.8 129 40.3
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.2e-11 72.4 132 40.9
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 5.5e-11 71.6 132 37.9
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.5e-11 71.6 166 36.7
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 5.5e-11 71.6 155 35.5
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.7e-10 69.3 134 39.6
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.3e-09 66.2 130 35.4
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 3.0e-09 65.9 133 32.3
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 4.0e-09 65.5 142 35.2
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.0e-09 65.5 142 36.6
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 5.2e-09 65.1 91 44.0
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 6.7e-09 64.7 127 37.0
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 7.5e-08 61.2 164 29.9
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 9.7e-08 60.8 57 56.1
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.7e-07 58.9 36 69.4
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 6.3e-07 58.2 62 53.2
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 3.1e-06 55.8 36 75.0
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 7.0e-06 54.7 153 32.7


User provided reference genes

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