Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.8e-176 622.5 319 100.0
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.7e-142 509.6 307 86.6
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 1.2e-140 503.4 311 84.2
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 1.8e-139 499.6 311 84.2
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.6e-124 449.9 311 77.8
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 4.9e-121 438.3 311 77.2
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 4.9e-113 411.8 311 74.6
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 6.0e-95 351.7 323 59.4
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 7.9e-95 351.3 310 61.3
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 2.3e-94 349.7 316 59.5
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 8.7e-94 347.8 212 79.2
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 4.3e-93 345.5 309 60.8
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 9.6e-93 344.4 311 60.8
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.6e-92 343.6 313 59.1
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.6e-92 343.6 309 60.2
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 2.8e-92 342.8 311 60.1
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 2.8e-92 342.8 311 59.2
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 4.8e-92 342.0 308 60.1
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 6.2e-92 341.7 309 60.5
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 8.2e-92 341.3 315 59.7
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.1e-91 339.3 236 70.8
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 4.1e-91 339.0 307 59.9
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 1.2e-90 337.4 245 68.2
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 1.5e-90 337.0 230 71.7
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 1.5e-90 337.0 306 60.1
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 2.0e-90 336.7 326 58.3
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.0e-90 336.7 269 64.3
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.4e-90 335.9 309 58.9
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 5.8e-90 335.1 320 58.4
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 1.0e-89 334.3 245 67.8
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.3e-89 334.0 239 69.9
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.3e-89 334.0 308 60.1
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 1.7e-89 333.6 308 59.1
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 3.8e-89 332.4 239 68.2
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.8e-89 332.4 269 63.6
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 6.5e-89 331.6 308 59.7
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.1e-88 330.9 308 59.4
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 1.4e-88 330.5 319 56.7
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 1.9e-88 330.1 312 59.0
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 9.3e-88 327.8 310 57.4
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 9.3e-88 327.8 315 57.1
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 4.6e-87 325.5 314 58.0
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 4.6e-87 325.5 312 58.0
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 4.6e-87 325.5 346 55.2
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 6.1e-87 325.1 309 57.9
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 6.1e-87 325.1 239 67.4
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 7.9e-87 324.7 326 55.5
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 1.8e-86 323.6 311 58.2
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 2.3e-86 323.2 323 56.3
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.0e-86 322.8 264 65.2
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 3.0e-86 322.8 311 56.3
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 6.7e-86 321.6 317 56.2
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 6.7e-86 321.6 279 60.6
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 6.7e-86 321.6 309 57.3
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.5e-85 320.5 306 58.2
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 1.5e-85 320.5 306 58.5
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.9e-85 320.1 241 67.2
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 2.5e-85 319.7 309 57.0
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 2.5e-85 319.7 308 57.1
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 2.5e-85 319.7 315 57.1
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 4.3e-85 318.9 309 55.7
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 4.3e-85 318.9 211 71.6
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 5.7e-85 318.5 311 55.9
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 7.4e-85 318.2 311 58.5
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 7.4e-85 318.2 211 71.6
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 9.7e-85 317.8 330 54.2
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 1.3e-84 317.4 274 63.1
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.6e-84 317.0 242 63.2
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 1.6e-84 317.0 309 57.3
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 1.6e-84 317.0 315 57.8
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 2.2e-84 316.6 197 77.7
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 2.8e-84 316.2 313 55.0
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 6.3e-84 315.1 321 53.0
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 8.2e-84 314.7 214 72.4
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.1e-83 314.3 275 60.7
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 2.4e-83 313.2 309 55.3
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 2.4e-83 313.2 312 55.8
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 3.1e-83 312.8 315 55.2
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 5.3e-83 312.0 310 54.8
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 6.9e-83 311.6 247 65.2
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 6.9e-83 311.6 312 54.8
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 9.0e-83 311.2 211 70.6
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 1.2e-82 310.8 297 57.9
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 1.5e-82 310.5 310 56.1
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 1.5e-82 310.5 343 51.9
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 2.6e-82 309.7 310 57.1
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.6e-82 309.7 310 56.1
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 2.6e-82 309.7 310 57.1
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 2.6e-82 309.7 312 56.1
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 4.5e-82 308.9 251 64.5
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 4.5e-82 308.9 311 56.6
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 7.7e-82 308.1 243 65.0
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 1.7e-81 307.0 218 67.9
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 2.2e-81 306.6 337 52.2
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 2.2e-81 306.6 198 74.2
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 3.8e-81 305.8 309 57.3
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.1e-80 304.3 214 67.8
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 1.4e-80 303.9 301 56.8
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 5.5e-80 302.0 224 65.2
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 2.1e-79 300.1 213 70.0
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 4.6e-79 298.9 305 55.7
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.4e-78 297.4 251 57.0
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 6.7e-78 295.0 246 61.8
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 2.0e-77 293.5 252 57.5
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 4.3e-77 292.4 247 63.6
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 9.7e-77 291.2 318 52.2
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 6.3e-76 288.5 324 51.2
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 6.3e-76 288.5 206 68.9
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 1.4e-72 277.3 313 52.1
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 3.2e-72 276.2 258 55.0
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 3.5e-66 256.1 215 56.3
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.9e-64 250.4 280 51.8
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 3.0e-62 243.0 242 51.7
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 4.4e-61 239.2 264 52.3
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 4.4e-61 239.2 231 52.8
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.6e-58 230.7 171 66.7
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 3.8e-57 226.1 197 59.4
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 1.5e-56 224.2 331 44.4
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 3.2e-56 223.0 191 61.3
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.1e-43 181.4 109 78.9
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 5.4e-43 179.1 167 53.3
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 9.8e-37 158.3 173 49.7
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 1.3e-36 157.9 144 55.6
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 1.1e-35 154.8 168 46.4
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 3.3e-32 143.3 83 78.3
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 4.3e-32 142.9 83 79.5
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 2.3e-30 137.1 207 37.7
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 5.8e-29 132.5 127 55.1
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 5.4e-27 125.9 125 51.2
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.6e-26 124.4 113 59.3
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 2.3e-25 120.6 68 80.9
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 7.3e-24 115.5 199 32.7
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 1.8e-22 110.9 150 37.3
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.7e-17 94.4 151 43.7
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 1.5e-16 91.3 154 42.9
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-14 85.1 57 66.7
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 1.4e-11 74.7 83 50.6
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.0e-09 68.6 144 35.4
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.1e-08 65.1 162 32.1
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 4.3e-08 63.2 37 81.1
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 7.3e-08 62.4 47 63.8
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 6.2e-07 59.3 31 80.6
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 6.2e-07 59.3 35 80.0


User provided reference genes

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