Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G311.68 Capsicum annuum HOM05D003564 ORTHO05D024794 1.6e-73 279.3 132 100.0
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 7.4e-47 190.7 168 62.5
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 2.8e-46 188.7 168 61.9
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 2.8e-46 188.7 168 61.9
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.4e-45 186.4 168 61.9
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.4e-45 186.4 168 61.3
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 5.3e-45 184.5 168 60.1
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 1.5e-44 183.0 168 60.1
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 4.6e-41 171.4 166 53.6
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 1.0e-40 170.2 165 57.0
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 1.3e-40 169.9 166 55.4
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 1.8e-40 169.5 166 53.6
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.0e-40 168.7 166 56.0
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 1.5e-39 166.4 166 53.6
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 1.5e-39 166.4 166 54.8
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 1.9e-39 166.0 166 53.0
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.9e-39 166.0 166 54.2
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 1.9e-39 166.0 166 53.6
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.9e-39 166.0 166 53.6
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 3.3e-39 165.2 166 54.8
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 3.3e-39 165.2 166 52.4
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 3.3e-39 165.2 166 53.0
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 3.3e-39 165.2 166 53.0
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.3e-39 165.2 166 56.0
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 4.3e-39 164.9 166 52.4
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 5.7e-39 164.5 166 55.4
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 7.4e-39 164.1 166 53.6
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 9.7e-39 163.7 166 54.2
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 2.2e-38 162.5 166 50.6
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 3.7e-38 161.8 163 52.1
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 4.8e-38 161.4 166 53.6
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 4.8e-38 161.4 163 53.4
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 4.8e-38 161.4 166 51.8
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 4.8e-38 161.4 166 51.8
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 4.8e-38 161.4 168 53.6
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 6.3e-38 161.0 166 51.8
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 6.3e-38 161.0 166 53.6
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 6.3e-38 161.0 166 52.4
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 8.2e-38 160.6 157 52.9
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 8.2e-38 160.6 166 53.0
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 8.2e-38 160.6 164 53.0
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 1.1e-37 160.2 164 51.8
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.1e-37 160.2 166 52.4
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.4e-37 159.8 166 51.8
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 1.4e-37 159.8 166 51.2
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.8e-37 159.5 167 50.9
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.8e-37 159.5 166 53.0
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 1.8e-37 159.5 166 53.0
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 2.4e-37 159.1 164 52.4
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 2.4e-37 159.1 166 51.8
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 3.1e-37 158.7 166 53.6
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 3.1e-37 158.7 164 52.4
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 3.1e-37 158.7 165 52.7
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 3.1e-37 158.7 166 50.6
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 5.3e-37 157.9 166 51.2
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 6.9e-37 157.5 166 52.4
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 6.9e-37 157.5 164 51.2
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 6.9e-37 157.5 163 52.1
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 6.9e-37 157.5 163 52.1
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 6.9e-37 157.5 169 53.3
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 9.0e-37 157.1 166 51.8
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 9.0e-37 157.1 164 51.2
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 1.2e-36 156.8 163 54.0
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 1.2e-36 156.8 164 52.4
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 1.2e-36 156.8 161 50.3
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 1.2e-36 156.8 163 52.8
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 1.5e-36 156.4 164 51.2
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 2.0e-36 156.0 167 52.1
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 2.0e-36 156.0 164 50.6
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 2.0e-36 156.0 166 51.2
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 2.0e-36 156.0 164 51.8
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 2.6e-36 155.6 163 50.9
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 4.5e-36 154.8 166 50.6
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 4.5e-36 154.8 164 53.0
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 4.5e-36 154.8 163 52.1
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 5.9e-36 154.5 166 52.4
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 5.9e-36 154.5 162 51.9
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 7.6e-36 154.1 165 50.3
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 7.6e-36 154.1 166 51.2
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 1.0e-35 153.7 164 51.8
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 1.0e-35 153.7 164 52.4
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 1.3e-35 153.3 167 50.3
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 1.7e-35 152.9 163 52.1
SHI00111 Sapria himalayana HOM05D003564 ORTHO05D005332 1.7e-35 152.9 167 50.3
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 2.2e-35 152.5 162 51.2
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 2.9e-35 152.1 169 49.7
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 3.8e-35 151.8 159 51.6
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 3.8e-35 151.8 164 51.2
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 5.0e-35 151.4 163 50.3
TAR365G0167 Trochodendron aralioides HOM05D003564 ORTHO05D024794 5.0e-35 151.4 94 73.4
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 6.5e-35 151.0 162 51.9
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 8.5e-35 150.6 166 48.8
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 1.9e-34 149.4 164 50.6
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 1.9e-34 149.4 146 54.1
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 2.5e-34 149.1 166 48.8
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 3.2e-34 148.7 163 49.7
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 4.2e-34 148.3 166 48.8
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 5.5e-34 147.9 166 49.4
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 5.5e-34 147.9 164 50.0
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 7.2e-34 147.5 164 49.4
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 7.2e-34 147.5 164 49.4
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 7.2e-34 147.5 164 49.4
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 9.3e-34 147.1 166 48.2
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 1.2e-33 146.7 163 50.9
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 1.2e-33 146.7 166 49.4
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 2.1e-33 146.0 94 71.3
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 2.7e-33 145.6 167 49.1
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 3.6e-33 145.2 166 49.4
Thecc.02G173700 Theobroma cacao HOM05D003564 ORTHO05D005332 3.6e-33 145.2 94 72.3
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 6.1e-33 144.4 163 49.7
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 6.1e-33 144.4 163 49.7
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 7.9e-33 144.1 167 50.3
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 1.0e-32 143.7 163 50.3
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 1.0e-32 143.7 163 50.3
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 1.3e-32 143.3 166 48.2
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 1.3e-32 143.3 163 49.1
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 1.8e-32 142.9 163 49.1
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 3.9e-32 141.7 163 49.7
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 3.9e-32 141.7 94 71.3
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 3.9e-32 141.7 169 48.5
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 5.1e-32 141.4 163 48.5
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 8.7e-32 140.6 163 47.9
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 8.7e-32 140.6 163 49.1
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 1.5e-31 139.8 163 48.5
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 1.5e-31 139.8 163 47.9
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 1.5e-31 139.8 163 47.9
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 1.5e-31 139.8 163 47.9
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 2.5e-31 139.0 163 47.2
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 7.4e-31 137.5 166 47.0
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 7.4e-31 137.5 179 45.8
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 1.7e-30 136.3 164 46.3
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 4.8e-30 134.8 163 43.6
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 4.8e-30 134.8 165 47.3
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.4e-29 133.3 219 39.7
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 2.4e-29 132.5 88 71.6
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 9.1e-29 130.6 182 44.5
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 1.2e-28 130.2 166 45.8
MD09G1275000 Malus domestica HOM05D003564 ORTHO05D024794 1.5e-28 129.8 94 66.0
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 2.6e-28 129.0 178 44.4
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 1.0e-27 127.1 154 47.4
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.3e-27 126.7 142 49.3
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 1.3e-27 126.7 154 46.8
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 8.5e-27 124.0 164 40.9
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.1e-25 119.4 164 40.2
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 1.8e-24 116.3 91 58.2
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 3.0e-24 115.5 88 59.1
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 3.0e-24 115.5 167 41.3
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 7.4e-23 110.9 99 53.5
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 6.5e-19 97.8 155 38.1
RcHm_v2.0_Chr2g0091411 Rosa chinensis HOM05D003564 ORTHO05D024794 1.1e-18 97.1 79 60.8
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 2.3e-16 89.4 157 35.0
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 5.2e-16 88.2 94 55.3
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 1.1e-15 87.0 83 50.6
RcHm_v2.0_Chr4g0385481 Rosa chinensis HOM05D003564 ORTHO05D024794 1.5e-15 86.7 58 69.0
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 8.2e-14 80.9 112 46.4
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 1.2e-12 77.0 87 44.8
Haze_26210 Corylus avellana HOM05D003564 ORTHO05D005332 1.6e-09 66.6 61 49.2
Lsat_1_v5_gn_8_109520 Lactuca sativa HOM05D003564 ORTHO05D232393 6.7e-08 61.2 66 43.9


User provided reference genes

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