Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 5.7e-118 427.6 210 100.0
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 2.5e-89 332.4 223 76.7
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 7.3e-89 330.9 223 76.2
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 3.1e-87 325.5 223 75.3
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 2.6e-78 295.8 176 79.5
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 4.4e-78 295.0 201 70.6
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 9.8e-78 293.9 215 67.4
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 1.7e-77 293.1 205 69.3
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 1.4e-76 290.0 205 68.8
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 4.1e-76 288.5 205 68.3
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 5.4e-76 288.1 230 64.3
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 5.4e-76 288.1 183 75.4
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 5.4e-76 288.1 205 68.3
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 9.2e-76 287.3 177 75.1
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.2e-75 287.0 185 74.1
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 1.2e-75 287.0 227 64.3
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.6e-75 286.6 217 64.5
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 2.7e-75 285.8 207 68.6
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 2.7e-75 285.8 205 67.8
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 6.0e-75 284.6 209 67.0
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 6.0e-75 284.6 213 64.3
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 1.3e-74 283.5 217 63.6
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 1.7e-74 283.1 217 64.1
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 2.3e-74 282.7 205 68.3
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 3.9e-74 282.0 209 65.6
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 1.5e-73 280.0 182 74.2
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 1.9e-73 279.6 174 73.6
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 2.5e-73 279.3 172 76.2
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 4.3e-73 278.5 172 76.2
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 5.6e-73 278.1 197 70.6
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 1.2e-72 276.9 209 66.5
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 1.6e-72 276.6 239 59.4
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 2.1e-72 276.2 177 74.0
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 2.8e-72 275.8 209 64.6
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 8.1e-72 274.2 172 75.0
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 1.4e-71 273.5 200 67.5
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 3.1e-71 272.3 205 66.8
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 4.0e-71 271.9 199 67.8
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 5.2e-71 271.6 181 75.7
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 5.2e-71 271.6 208 63.5
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 6.8e-71 271.2 190 68.4
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 8.9e-71 270.8 199 65.8
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 2.0e-70 269.6 194 66.5
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 3.4e-70 268.9 175 73.7
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 5.8e-70 268.1 206 63.1
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 7.5e-70 267.7 188 70.2
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 7.5e-70 267.7 182 69.8
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 9.9e-70 267.3 205 64.9
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 1.3e-69 266.9 175 72.6
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 2.2e-69 266.2 197 67.0
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 2.9e-69 265.8 201 63.7
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 3.7e-69 265.4 171 71.9
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 8.3e-69 264.2 181 67.4
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 1.1e-68 263.8 184 69.6
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 1.9e-68 263.1 172 71.5
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 2.4e-68 262.7 186 67.7
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 2.4e-68 262.7 186 67.7
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 4.1e-68 261.9 191 63.4
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 1.7e-66 256.5 197 63.5
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 2.3e-66 256.1 212 59.4
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 3.0e-66 255.8 193 64.8
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 3.0e-66 255.8 172 72.1
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 6.6e-66 254.6 180 70.0
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 6.6e-66 254.6 183 68.9
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 6.6e-66 254.6 180 70.0
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 6.6e-66 254.6 180 70.0
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 6.6e-66 254.6 183 68.9
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 8.6e-66 254.2 174 72.4
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 8.6e-66 254.2 202 63.4
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 1.1e-65 253.8 175 67.4
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 1.1e-65 253.8 186 66.1
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 3.3e-65 252.3 172 71.5
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 3.3e-65 252.3 188 67.0
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 5.6e-65 251.5 175 69.1
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 5.6e-65 251.5 177 70.1
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 9.6e-65 250.8 175 69.1
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 2.1e-64 249.6 200 64.0
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 2.8e-64 249.2 185 66.5
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 4.7e-64 248.4 173 68.8
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 1.1e-63 247.3 184 66.8
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 1.1e-63 247.3 172 71.5
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 2.4e-63 246.1 187 59.4
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 3.1e-63 245.7 207 61.4
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 5.8e-62 241.5 203 58.6
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 2.7e-59 232.6 168 64.3
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 2.7e-59 232.6 174 64.4
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 6.0e-59 231.5 188 64.9
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 1.5e-57 226.9 198 61.1
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 5.6e-57 224.9 153 69.3
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 1.6e-56 223.4 174 62.6
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 2.8e-56 222.6 172 65.1
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 1.4e-55 220.3 151 70.2
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 2.4e-55 219.5 137 73.0
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 1.1e-52 210.7 133 75.2
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 7.1e-52 208.0 190 60.0
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 9.6e-49 197.6 141 67.4
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 1.8e-47 193.4 167 55.7
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 2.6e-46 189.5 158 62.7
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 1.4e-44 183.7 161 53.4
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 2.4e-44 183.0 160 58.8
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 7.1e-44 181.4 195 52.3
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 2.1e-43 179.9 124 70.2
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 4.3e-41 172.2 161 50.3
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 6.9e-39 164.9 137 62.0
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 6.9e-39 164.9 205 45.4
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 5.8e-38 161.8 162 46.3
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 1.1e-36 157.5 163 49.1
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 3.2e-36 156.0 175 49.1
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 6.7e-34 148.3 123 61.8
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 5.7e-33 145.2 85 80.0
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 9.0e-31 137.9 101 65.3
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 4.5e-30 135.6 137 53.3
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 3.8e-29 132.5 84 73.8
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 1.4e-28 130.6 92 66.3
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 4.2e-28 129.0 143 49.7
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 3.3e-25 119.4 129 49.6
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 2.0e-22 110.2 71 77.5
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 2.0e-22 110.2 142 41.5
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 7.2e-20 101.7 131 41.2
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 7.2e-20 101.7 114 52.6
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 7.2e-20 101.7 60 76.7
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 5.7e-17 92.0 141 39.7
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 1.1e-15 87.8 79 62.0
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 1.2e-14 84.3 57 71.9
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 7.7e-14 81.6 79 59.5
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 4.2e-12 75.9 109 36.7
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 2.0e-09 67.0 48 68.8
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 2.8e-08 63.2 39 71.8
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 4.8e-08 62.4 43 60.5


User provided reference genes

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