Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 8.4e-178 627.1 359 100.0
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.2e-149 532.7 360 83.6
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 2.6e-147 525.8 360 83.1
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 2.2e-146 522.7 360 82.5
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 3.0e-111 406.0 352 65.3
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 3.5e-99 365.9 346 63.6
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.6e-78 296.6 359 49.9
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 4.9e-69 265.8 261 64.0
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 3.3e-65 253.1 299 50.5
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 4.0e-63 246.1 375 44.3
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 6.9e-63 245.4 358 45.3
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 9.0e-63 245.0 371 41.8
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 1.2e-62 244.6 366 42.6
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 3.4e-62 243.0 366 44.8
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 2.2e-61 240.4 359 43.5
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 8.4e-61 238.4 374 41.4
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.4e-60 236.9 373 39.4
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.2e-60 236.5 374 39.8
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 9.3e-60 235.0 374 39.6
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 9.3e-60 235.0 390 40.3
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.1e-59 233.8 357 42.0
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 2.7e-59 233.4 384 40.4
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.3e-58 231.1 384 39.8
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.3e-58 231.1 356 43.0
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.7e-58 230.7 353 43.6
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.3e-58 230.3 357 42.6
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.9e-57 227.3 353 43.6
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.3e-56 224.6 389 40.1
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.1e-56 223.8 358 43.3
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.8e-56 223.4 374 38.2
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 4.8e-56 222.6 377 39.8
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.1e-55 219.9 353 42.5
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.0e-55 219.5 351 42.2
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 6.9e-55 218.8 361 42.4
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 9.0e-55 218.4 290 44.8
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 9.0e-55 218.4 372 39.5
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 1.5e-54 217.6 302 42.7
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 5.8e-54 215.7 377 39.5
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.3e-53 214.5 376 39.1
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.9e-53 212.6 343 40.2
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 6.4e-53 212.2 372 38.4
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 1.4e-52 211.1 374 38.0
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.4e-52 211.1 353 41.6
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.9e-52 210.7 357 38.4
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.6e-51 207.6 363 39.7
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 3.5e-51 206.5 324 45.7
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 3.5e-51 206.5 360 39.7
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 7.9e-51 205.3 364 39.3
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.8e-50 204.1 377 38.2
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.8e-50 204.1 359 36.8
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 5.1e-50 202.6 352 39.2
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 4.3e-49 199.5 363 39.7
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 5.6e-49 199.1 300 44.7
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.6e-48 197.6 363 38.6
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.6e-48 197.6 304 40.8
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 1.8e-47 194.1 363 39.1
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.3e-47 192.6 380 36.1
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 5.3e-47 192.6 388 36.3
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 6.9e-47 192.2 281 44.8
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 9.0e-47 191.8 380 35.5
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.2e-46 191.4 353 39.9
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 2.0e-46 190.7 360 37.8
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.4e-46 189.9 380 35.5
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 4.5e-46 189.5 378 34.4
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 1.7e-45 187.6 350 37.1
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 2.9e-45 186.8 347 37.8
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 3.8e-45 186.4 392 37.5
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 6.5e-45 185.7 380 35.5
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 8.4e-45 185.3 355 37.5
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 2.5e-44 183.7 383 39.4
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 3.2e-44 183.3 345 36.8
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 4.2e-44 183.0 385 40.3
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 5.5e-44 182.6 250 40.0
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.6e-43 181.0 400 35.5
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.1e-43 180.6 356 36.2
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 3.5e-43 179.9 356 37.4
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.8e-42 177.6 376 35.9
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 3.0e-42 176.8 373 37.5
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 3.9e-42 176.4 383 37.3
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 8.7e-42 175.3 346 36.1
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.1e-41 174.9 353 38.8
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 1.5e-41 174.5 420 33.6
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 4.3e-41 172.9 378 37.6
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 5.7e-41 172.6 358 35.2
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 7.4e-41 172.2 387 38.2
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 2.1e-40 170.6 351 35.3
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.8e-40 170.2 353 34.8
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.7e-40 169.9 311 35.7
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.4e-39 167.9 295 36.9
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 2.4e-39 167.2 357 35.0
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 3.1e-39 166.8 370 34.6
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 5.3e-39 166.0 382 38.2
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 6.9e-39 165.6 313 34.8
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 9.0e-39 165.2 355 35.2
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.2e-38 164.9 212 45.3
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 2.6e-38 163.7 371 34.2
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 4.5e-38 162.9 366 35.8
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.0e-37 161.8 370 34.6
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.7e-37 161.0 347 32.6
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 1.7e-37 161.0 358 33.8
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 2.2e-37 160.6 327 36.1
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 6.5e-37 159.1 374 35.8
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.4e-36 157.9 352 33.5
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.9e-36 157.5 352 33.0
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 5.5e-36 156.0 286 38.5
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 5.5e-36 156.0 302 35.8
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.2e-35 154.8 286 34.3
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 2.7e-35 153.7 380 35.8
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.5e-33 147.1 277 34.3
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 4.3e-33 146.4 356 34.3
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.3e-32 144.8 357 33.9
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 2.2e-32 144.1 351 34.5
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 3.7e-32 143.3 357 33.9
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 4.8e-32 142.9 314 32.8
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 8.2e-32 142.1 282 37.2
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 2.6e-30 137.1 217 37.3
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 2.6e-30 137.1 422 30.8
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 5.9e-30 136.0 348 31.3
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 1.2e-27 128.3 370 34.1
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 4.6e-27 126.3 359 29.2
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 2.3e-26 124.0 364 33.8
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 6.7e-26 122.5 368 30.4
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.2e-22 111.7 364 28.6
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.6e-22 110.5 194 39.7
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 4.5e-22 109.8 231 31.2
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 2.2e-21 107.5 228 30.3
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 7.2e-20 102.4 157 43.9
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 1.6e-19 101.3 117 44.4
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 2.0e-17 94.4 195 31.8
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 9.7e-17 92.0 265 27.9
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 1.7e-16 91.3 406 24.1
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 3.7e-16 90.1 241 32.0
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 5.3e-15 86.3 173 40.5
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 9.1e-15 85.5 382 25.7
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 2.5e-12 77.4 245 22.9
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 2.1e-11 74.3 216 29.2
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 8.8e-10 68.9 104 32.7
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 9.1e-07 58.9 87 35.6


User provided reference genes

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