Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 7.6e-253 876.7 447 100.0
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 4.9e-228 794.3 448 90.8
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 5.5e-227 790.8 447 90.2
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 7.9e-226 786.9 447 89.9
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.9e-216 755.7 447 87.9
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 4.5e-205 718.0 447 82.3
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 2.4e-174 615.9 448 70.8
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 5.0e-172 608.2 456 69.1
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 2.3e-169 599.4 451 68.5
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 5.2e-169 598.2 453 67.8
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 5.7e-168 594.7 451 69.0
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 5.9e-165 584.7 458 65.9
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 2.9e-164 582.4 467 64.7
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 8.6e-164 580.9 450 66.9
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.5e-163 580.1 445 67.4
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 3.3e-163 578.9 461 65.7
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 9.5e-163 577.4 430 68.6
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.2e-162 577.0 447 67.1
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.2e-162 577.0 454 66.7
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.1e-162 576.2 437 67.0
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.6e-162 575.5 435 69.7
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.8e-161 573.2 444 67.1
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 2.3e-161 572.8 450 66.2
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 2.3e-161 572.8 449 66.4
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 4.0e-161 572.0 454 66.5
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 4.0e-161 572.0 438 66.9
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.0e-161 572.0 441 66.9
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 5.2e-161 571.6 470 66.0
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.5e-160 570.1 439 66.1
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 4.4e-160 568.5 452 65.5
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 7.5e-160 567.8 416 69.5
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.3e-159 567.0 439 65.4
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 1.3e-159 567.0 437 66.4
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.3e-159 567.0 438 66.7
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.7e-159 566.6 441 65.8
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.7e-159 566.6 476 63.0
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 2.9e-159 565.8 468 64.7
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 2.9e-159 565.8 452 65.3
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.1e-158 563.9 452 65.0
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.4e-158 563.5 517 59.4
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.9e-158 563.1 460 66.1
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 3.2e-158 562.4 436 66.5
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 5.4e-158 561.6 436 66.5
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 9.2e-158 560.8 485 62.9
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.2e-157 560.5 431 67.5
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.3e-156 557.0 430 66.7
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 2.3e-156 556.2 442 64.9
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.3e-155 552.4 446 63.7
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 4.3e-155 552.0 439 65.6
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.7e-154 548.5 447 64.4
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 4.0e-153 545.4 446 63.9
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.5e-152 543.5 447 63.1
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 1.5e-152 543.5 447 63.1
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 2.6e-152 542.7 456 63.8
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 2.2e-151 539.7 443 63.0
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 6.4e-151 538.1 472 62.7
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 8.3e-151 537.7 442 64.7
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.1e-150 537.3 454 62.8
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.9e-150 536.6 444 61.7
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 2.4e-150 536.2 454 61.5
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.2e-149 533.9 454 61.5
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 2.7e-149 532.7 448 63.4
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 2.7e-149 532.7 466 62.2
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 6.0e-149 531.6 481 59.5
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 7.8e-149 531.2 459 61.7
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.3e-148 530.4 433 63.7
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 3.0e-148 529.3 438 62.1
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 8.6e-148 527.7 452 60.6
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 1.5e-147 526.9 456 61.6
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 1.9e-147 526.6 454 60.8
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 3.6e-146 522.3 434 61.5
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.1e-145 520.8 444 60.4
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 4.0e-145 518.8 451 61.2
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 2.0e-144 516.5 439 61.3
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 2.6e-144 516.2 433 61.4
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 2.2e-143 513.1 443 59.4
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 6.4e-143 511.5 442 60.0
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 6.4e-143 511.5 443 59.1
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.9e-142 510.0 425 62.1
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 9.2e-142 507.7 414 63.5
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.6e-141 506.9 456 59.0
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 1.6e-141 506.9 460 59.1
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 2.7e-141 506.1 429 60.6
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 2.7e-141 506.1 429 60.6
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 6.0e-141 505.0 440 59.1
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 7.8e-141 504.6 437 60.0
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 3.0e-140 502.7 453 58.7
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 8.6e-140 501.1 437 59.3
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 2.5e-139 499.6 435 60.5
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 5.6e-139 498.4 476 56.1
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 5.6e-139 498.4 503 54.3
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 4.7e-138 495.4 413 64.2
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 6.2e-138 495.0 454 59.0
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.4e-137 493.8 437 58.8
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 2.2e-135 486.5 417 62.6
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 2.9e-135 486.1 374 64.7
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 5.4e-134 481.9 443 58.7
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 3.5e-133 479.2 434 62.2
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 9.0e-129 464.5 433 58.2
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.5e-128 463.8 474 54.4
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 3.4e-128 462.6 473 54.1
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 9.9e-128 461.1 432 57.2
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 9.9e-128 461.1 484 52.3
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 3.2e-126 456.1 469 52.7
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 1.6e-122 443.7 352 66.2
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.5e-115 419.9 366 59.6
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 7.6e-112 408.3 463 48.8
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.7e-109 399.8 443 52.1
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.8e-103 379.4 291 66.7
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.5e-99 367.5 308 61.4
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 2.2e-98 363.6 523 40.9
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 6.3e-98 362.1 486 44.9
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.7e-95 354.0 349 56.7
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 1.6e-93 347.4 365 55.1
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.8e-92 344.0 474 44.5
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.1e-89 332.8 268 64.9
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 2.2e-79 300.4 617 34.7
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 5.7e-75 285.8 517 38.1
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 2.1e-61 240.7 455 36.7
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 4.0e-60 236.5 456 34.2
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 2.0e-56 224.2 489 33.3
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 6.8e-44 182.6 155 61.9
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 4.4e-43 179.9 248 43.1
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 7.0e-41 172.6 239 44.8
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 1.4e-33 148.3 210 42.4
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 3.6e-29 133.7 125 66.4
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 8.3e-26 122.5 188 46.8
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 5.4e-25 119.8 188 45.7
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 7.8e-24 115.9 104 56.7
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.5e-22 110.9 84 70.2
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 3.1e-20 104.0 149 43.0
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.4e-17 94.4 106 47.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 6.0e-16 89.7 62 66.1
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 1.7e-15 88.2 62 64.5
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.1e-13 81.3 113 40.7
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 8.1e-13 79.3 110 43.6
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.2e-11 75.5 112 42.9
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 7.6e-11 72.8 94 42.6
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 4.2e-09 67.0 93 44.1
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.6e-08 65.1 93 43.0
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 2.7e-08 64.3 39 71.8
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 7.9e-08 62.8 82 45.1
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 1.0e-07 62.4 79 49.4
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 2.5e-06 57.8 145 31.0
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 2.5e-06 57.8 30 86.7


User provided reference genes

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