Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 5.9e-37 156.8 66 100.0
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 7.2e-35 149.8 66 90.9
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 4.4e-32 140.6 67 85.1
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.8e-30 135.2 71 78.9
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.8e-30 135.2 68 80.9
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 2.4e-30 134.8 67 82.1
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 3.1e-30 134.4 64 79.7
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 5.3e-30 133.7 65 81.5
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 7.0e-30 133.3 68 80.9
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 1.2e-29 132.5 67 83.6
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 1.6e-29 132.1 70 82.9
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.6e-29 132.1 62 83.9
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 2.0e-29 131.7 69 78.3
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 2.0e-29 131.7 64 84.4
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 2.0e-29 131.7 67 83.6
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 3.5e-29 131.0 67 82.1
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 3.5e-29 131.0 63 82.5
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 3.5e-29 131.0 67 83.6
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 4.5e-29 130.6 67 85.1
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 4.5e-29 130.6 64 84.4
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 4.5e-29 130.6 65 80.0
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 4.5e-29 130.6 62 83.9
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 5.9e-29 130.2 64 79.7
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 5.9e-29 130.2 68 77.9
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 5.9e-29 130.2 67 82.1
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 7.7e-29 129.8 69 79.7
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 7.7e-29 129.8 69 79.7
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 7.7e-29 129.8 69 79.7
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 7.7e-29 129.8 69 79.7
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 7.7e-29 129.8 66 80.3
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 7.7e-29 129.8 66 80.3
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 7.7e-29 129.8 68 79.4
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 1.0e-28 129.4 67 80.6
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 1.3e-28 129.0 65 78.5
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 1.7e-28 128.6 65 78.5
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 1.7e-28 128.6 66 75.8
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 2.2e-28 128.3 70 78.6
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.2e-28 128.3 71 76.1
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 2.2e-28 128.3 68 76.5
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 2.9e-28 127.9 63 79.4
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 3.8e-28 127.5 58 84.5
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 5.0e-28 127.1 66 80.3
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 5.0e-28 127.1 66 80.3
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 5.0e-28 127.1 71 76.1
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 5.0e-28 127.1 68 80.9
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 6.5e-28 126.7 68 80.9
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 6.5e-28 126.7 66 77.3
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 6.5e-28 126.7 58 84.5
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 8.5e-28 126.3 57 82.5
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 1.1e-27 125.9 61 85.2
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 1.5e-27 125.6 68 77.9
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.5e-27 125.6 71 74.6
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.5e-27 125.6 71 74.6
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.5e-27 125.6 64 79.7
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.9e-27 125.2 62 79.0
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 2.5e-27 124.8 71 74.6
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 4.2e-27 124.0 57 82.5
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 5.5e-27 123.6 71 73.2
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 5.5e-27 123.6 71 73.2
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 7.2e-27 123.2 64 76.6
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 7.2e-27 123.2 57 82.5
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 9.4e-27 122.9 64 78.1
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 9.4e-27 122.9 67 79.1
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 1.2e-26 122.5 67 79.1
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 1.2e-26 122.5 65 76.9
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 1.2e-26 122.5 67 79.1
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 2.7e-26 121.3 65 76.9
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 2.7e-26 121.3 69 76.8
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 4.7e-26 120.6 63 81.0
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 4.7e-26 120.6 67 79.1
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 8.0e-26 119.8 71 74.6
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 1.0e-25 119.4 67 77.6
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 1.4e-25 119.0 67 76.1
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 1.4e-25 119.0 65 73.8
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 1.4e-25 119.0 65 73.8
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 1.4e-25 119.0 65 73.8
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 1.4e-25 119.0 65 73.8
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 1.4e-25 119.0 65 73.8
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 1.4e-25 119.0 66 74.2
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 1.8e-25 118.6 63 76.2
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 1.8e-25 118.6 63 76.2
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 2.3e-25 118.2 60 76.7
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 6.8e-25 116.7 65 73.8
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 8.8e-25 116.3 64 75.0
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 2.0e-24 115.2 71 71.8
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 2.6e-24 114.8 69 68.1
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 3.4e-24 114.4 63 71.4
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 3.4e-24 114.4 63 71.4
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 3.4e-24 114.4 63 71.4
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 9.8e-24 112.8 63 73.0
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 6.3e-23 110.2 51 88.2
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 4.1e-22 107.5 51 82.4
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 9.1e-22 106.3 62 66.1
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 9.1e-22 106.3 65 64.6
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 1.2e-21 105.9 50 86.0
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 2.0e-21 105.1 50 84.0
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 2.0e-21 105.1 50 82.0
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 2.0e-21 105.1 54 75.9
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 3.5e-21 104.4 65 61.5
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 7.7e-21 103.2 58 72.4
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.3e-20 102.4 57 64.9
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 5.0e-20 100.5 52 78.8
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 8.6e-20 99.8 60 70.0
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 1.9e-19 98.6 59 67.8
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.6e-18 95.5 55 63.6
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 2.8e-18 94.7 48 70.8
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 8.0e-18 93.2 53 75.5
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 1.4e-17 92.4 51 76.5
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 1.8e-17 92.0 65 63.1
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 8.9e-17 89.7 59 67.8
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 7.5e-16 86.7 50 72.0
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 1.3e-15 85.9 53 67.9
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 8.3e-15 83.2 52 73.1
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 1.9e-11 72.0 52 65.4
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 3.3e-11 71.2 51 58.8
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 7.3e-11 70.1 36 77.8
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 7.3e-11 70.1 36 77.8
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 9.5e-11 69.7 34 82.4
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 9.5e-11 69.7 32 84.4
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 1.2e-10 69.3 36 77.8
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 1.2e-10 69.3 36 69.4
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 3.6e-10 67.8 36 77.8
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 4.7e-10 67.4 34 79.4
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 1.0e-09 66.2 32 84.4
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.4e-09 65.9 33 66.7
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 1.8e-09 65.5 38 76.3
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 1.2e-08 62.8 35 71.4
MCO07G568 Micromonas commoda HOM05D006241 ORTHO05D007842 6.4e-07 57.0 50 46.0


User provided reference genes

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