Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 4.2e-130 468.0 231 100.0
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 1.6e-121 439.5 219 98.6
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.5e-26 123.2 69 87.0
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.5e-26 123.2 69 87.0
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 1.8e-24 117.1 81 72.8
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 1.8e-24 117.1 81 72.8
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 3.1e-24 116.3 81 71.6
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 1.2e-20 104.4 60 80.0
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 4.6e-20 102.4 62 75.8
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 4.6e-20 102.4 73 64.4
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 1.8e-19 100.5 69 71.0
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 1.8e-19 100.5 71 66.2
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 6.7e-19 98.6 71 64.8
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 8.7e-19 98.2 68 67.6
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 8.7e-19 98.2 80 55.0
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 1.5e-18 97.4 71 63.4
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 3.3e-18 96.3 72 58.3
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 4.3e-18 95.9 71 60.6
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 4.3e-18 95.9 71 63.4
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 5.6e-18 95.5 95 47.4
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 7.4e-18 95.1 77 61.0
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 7.4e-18 95.1 68 63.2
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 7.4e-18 95.1 72 56.9
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 9.6e-18 94.7 72 56.9
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 9.6e-18 94.7 79 57.0
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 1.3e-17 94.4 71 60.6
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 1.3e-17 94.4 73 58.9
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 1.3e-17 94.4 60 70.0
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 1.6e-17 94.0 71 57.7
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 2.8e-17 93.2 71 60.6
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 2.8e-17 93.2 68 60.3
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 3.7e-17 92.8 71 59.2
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 3.7e-17 92.8 71 59.2
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 3.7e-17 92.8 58 69.0
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 3.7e-17 92.8 57 73.7
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 6.2e-17 92.0 64 65.6
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 6.2e-17 92.0 86 50.0
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 6.2e-17 92.0 73 58.9
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 8.2e-17 91.7 64 65.6
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 8.2e-17 91.7 63 61.9
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 8.2e-17 91.7 58 67.2
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 1.1e-16 91.3 64 65.6
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 1.1e-16 91.3 64 62.5
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 1.1e-16 91.3 75 57.3
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 1.1e-16 91.3 71 59.2
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 1.1e-16 91.3 64 62.5
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.4e-16 90.9 72 56.9
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 1.4e-16 90.9 58 65.5
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 1.4e-16 90.9 71 57.7
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 1.4e-16 90.9 71 57.7
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 1.4e-16 90.9 71 57.7
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 1.8e-16 90.5 66 63.6
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.4e-16 90.1 86 48.8
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 2.4e-16 90.1 71 57.7
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 3.1e-16 89.7 75 54.7
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 3.1e-16 89.7 64 64.1
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 3.1e-16 89.7 60 61.7
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 4.0e-16 89.4 64 60.9
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 6.9e-16 88.6 66 59.1
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 9.0e-16 88.2 66 57.6
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 9.0e-16 88.2 71 57.7
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 1.2e-15 87.8 66 59.1
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.2e-15 87.8 58 63.8
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.5e-15 87.4 73 54.8
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 1.5e-15 87.4 67 59.7
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 1.5e-15 87.4 67 59.7
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 1.5e-15 87.4 77 53.2
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 1.5e-15 87.4 68 54.4
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 2.6e-15 86.7 64 60.9
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 2.6e-15 86.7 68 54.4
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 5.8e-15 85.5 58 62.1
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 7.6e-15 85.1 65 60.0
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 1.7e-14 84.0 73 53.4
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 1.7e-14 84.0 73 53.4
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 1.7e-14 84.0 65 56.9
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 1.7e-14 84.0 65 60.0
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 2.2e-14 83.6 65 56.9
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 2.9e-14 83.2 52 73.1
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 6.5e-14 82.0 64 60.9
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 8.4e-14 81.6 77 51.9
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 1.1e-13 81.3 89 50.6
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 1.4e-13 80.9 52 67.3
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 3.2e-13 79.7 83 49.4
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 5.5e-13 79.0 83 49.4
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 1.6e-12 77.4 91 46.2
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 3.5e-12 76.3 91 45.1
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 3.5e-12 76.3 115 40.0
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 3.5e-12 76.3 91 45.1
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 3.5e-12 76.3 91 45.1
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 3.5e-12 76.3 71 52.1
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 4.6e-12 75.9 84 47.6
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 6.0e-12 75.5 91 44.0
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 7.9e-12 75.1 91 44.0
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 1.0e-11 74.7 88 40.9
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 1.1e-10 71.2 45 64.4
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 9.7e-10 68.2 84 40.5
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 2.8e-09 66.6 48 56.2
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 4.8e-09 65.9 75 46.7
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 5.0e-06 55.8 65 38.5
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 6.5e-06 55.5 63 39.7
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 8.5e-06 55.1 65 38.5


User provided reference genes

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