Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 1.5e-109 399.4 193 100.0
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.5e-43 180.3 193 57.5
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 1.5e-43 180.3 193 57.5
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 2.5e-43 179.5 193 57.5
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 4.2e-43 178.7 193 57.0
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 5.5e-43 178.3 193 56.5
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 8.0e-42 174.5 192 56.2
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 8.3e-39 164.5 193 51.8
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.4e-38 162.9 178 54.5
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 5.4e-38 161.8 193 51.3
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 1.6e-37 160.2 178 52.8
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 7.7e-37 157.9 178 53.4
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.3e-36 157.1 193 50.3
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 2.3e-36 156.4 177 52.5
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 2.9e-36 156.0 177 51.4
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 8.6e-36 154.5 177 52.0
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 8.6e-36 154.5 177 50.8
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.1e-35 154.1 178 52.2
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.1e-35 154.1 178 51.1
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.1e-35 154.1 178 51.1
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 1.9e-35 153.3 178 51.1
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 3.3e-35 152.5 179 51.4
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 3.3e-35 152.5 178 51.1
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.2e-35 152.1 193 48.7
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 4.2e-35 152.1 178 51.1
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 4.2e-35 152.1 178 51.1
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 4.2e-35 152.1 193 48.7
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 4.2e-35 152.1 193 48.7
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 4.2e-35 152.1 178 50.6
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 5.5e-35 151.8 178 51.1
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 7.2e-35 151.4 148 58.8
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 7.2e-35 151.4 178 50.6
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.2e-34 150.6 178 50.6
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.6e-34 150.2 178 48.9
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.6e-34 150.2 178 50.6
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 1.6e-34 150.2 178 50.6
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.6e-34 150.2 178 50.6
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 1.6e-34 150.2 178 50.6
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 2.1e-34 149.8 193 48.2
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 2.8e-34 149.4 178 50.6
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.8e-34 149.4 178 50.0
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 2.8e-34 149.4 178 50.0
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 2.8e-34 149.4 179 50.8
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 2.8e-34 149.4 178 50.6
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 2.8e-34 149.4 178 50.0
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 2.8e-34 149.4 176 49.4
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 3.6e-34 149.1 178 50.0
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.6e-34 149.1 178 50.0
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.6e-34 149.1 178 50.0
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 3.6e-34 149.1 178 50.0
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 3.6e-34 149.1 193 48.2
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 3.6e-34 149.1 177 49.7
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 3.6e-34 149.1 179 50.3
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 4.7e-34 148.7 193 47.7
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 4.7e-34 148.7 178 49.4
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 4.7e-34 148.7 177 50.3
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 4.7e-34 148.7 178 50.0
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 4.7e-34 148.7 177 49.7
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 6.1e-34 148.3 179 49.7
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 6.1e-34 148.3 193 48.2
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 8.0e-34 147.9 178 49.4
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 8.0e-34 147.9 178 49.4
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 8.0e-34 147.9 178 50.0
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 8.0e-34 147.9 192 47.9
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 8.0e-34 147.9 192 47.9
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.0e-33 147.5 178 49.4
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 1.4e-33 147.1 193 47.7
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.4e-33 147.1 178 49.4
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 1.8e-33 146.7 193 47.2
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 1.8e-33 146.7 176 48.3
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 2.3e-33 146.4 177 50.3
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.3e-33 146.4 178 48.9
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.0e-33 146.0 178 49.4
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.0e-33 146.0 193 47.7
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.0e-33 146.0 193 46.6
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 3.0e-33 146.0 177 49.7
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 4.0e-33 145.6 193 47.2
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 4.0e-33 145.6 177 49.2
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 5.2e-33 145.2 193 46.6
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 5.2e-33 145.2 192 49.0
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 6.8e-33 144.8 179 48.6
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 6.8e-33 144.8 192 46.9
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 6.8e-33 144.8 178 48.3
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 8.9e-33 144.4 193 46.6
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 8.9e-33 144.4 193 47.2
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 8.9e-33 144.4 177 48.6
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.2e-32 144.1 193 45.6
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 1.2e-32 144.1 178 48.9
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 1.2e-32 144.1 183 49.2
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.5e-32 143.7 193 46.1
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 2.0e-32 143.3 193 47.2
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 2.0e-32 143.3 179 48.0
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 3.4e-32 142.5 193 46.1
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 4.4e-32 142.1 178 48.3
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 4.4e-32 142.1 177 48.6
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 4.4e-32 142.1 179 47.5
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 4.4e-32 142.1 179 47.5
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 5.7e-32 141.7 177 48.0
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 5.7e-32 141.7 176 48.3
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 5.7e-32 141.7 177 48.0
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 7.5e-32 141.4 193 45.6
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 7.5e-32 141.4 193 46.1
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 9.8e-32 141.0 176 48.3
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 9.8e-32 141.0 178 46.6
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 2.2e-31 139.8 177 47.5
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 2.2e-31 139.8 177 47.5
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 2.2e-31 139.8 171 50.9
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 2.8e-31 139.4 178 47.8
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 2.8e-31 139.4 193 44.0
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 3.7e-31 139.0 179 47.5
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 3.7e-31 139.0 179 47.5
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.4e-30 137.1 178 47.2
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 3.2e-30 136.0 177 46.3
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 7.0e-30 134.8 193 44.6
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.0e-29 133.3 206 42.2
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 4.6e-29 132.1 193 43.5
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.9e-29 131.7 144 54.2
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.7e-28 130.2 144 54.2
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 2.3e-28 129.8 181 45.9
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 2.3e-28 129.8 177 46.3
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 3.9e-28 129.0 152 50.0
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 6.6e-28 128.3 143 53.8
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 1.1e-27 127.5 142 53.5
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 1.5e-27 127.1 192 41.1
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 3.3e-27 125.9 142 52.8
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 4.3e-27 125.6 174 47.1
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 9.5e-27 124.4 177 41.8
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 1.2e-26 124.0 191 41.9
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 1.0e-25 120.9 156 44.9
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 4.0e-25 119.0 177 41.2
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 4.9e-23 112.1 94 58.5
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 2.7e-21 106.3 148 43.9
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 6.0e-21 105.1 93 58.1
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 6.0e-21 105.1 93 58.1
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.3e-20 103.2 81 63.0
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 4.3e-19 99.0 167 38.3
CAN.G792.2 Capsicum annuum HOM05D000433 ORTHO05D003991 1.5e-08 63.9 39 71.8
CAN.G309.89 Capsicum annuum HOM05D000433 ORTHO05D003991 3.4e-08 62.8 39 71.8
Solyc11g071227.1 Solanum lycopersicum HOM05D000433 ORTHO05D003991 4.9e-07 58.9 34 70.6
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.1e-06 57.8 111 40.5
Peaxi162Scf00227g00007 Petunia axillaris HOM05D000433 ORTHO05D003991 1.9e-06 57.0 34 70.6
Peaxi162Scf00323g00934 Petunia axillaris HOM05D000433 ORTHO05D003991 1.9e-06 57.0 34 70.6
Nitab4.5_0009835g0010 Nicotiana tabacum HOM05D000433 ORTHO05D003991 2.4e-06 56.6 34 67.6
Potri.006G239402 Populus trichocarpa HOM05D000433 ORTHO05D003991 4.1e-06 55.8 34 70.6
Solyc08g066720.3 Solanum lycopersicum HOM05D000433 ORTHO05D003991 5.4e-06 55.5 34 67.6
Sopen08g020690 Solanum pennellii HOM05D000433 ORTHO05D003991 5.4e-06 55.5 34 67.6


User provided reference genes

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