Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 2.0e-28 128.3 58 100.0
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 3.0e-16 87.8 58 62.1
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.9e-15 85.1 55 67.3
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 2.5e-15 84.7 55 67.3
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.5e-15 84.7 55 67.3
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 2.5e-15 84.7 55 67.3
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 7.3e-15 83.2 52 69.2
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 2.1e-14 81.6 59 62.7
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 2.8e-14 81.3 56 64.3
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 4.7e-14 80.5 58 65.5
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 4.7e-14 80.5 55 61.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 8.1e-14 79.7 50 68.0
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 8.1e-14 79.7 58 55.2
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.4e-13 79.0 55 65.5
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.8e-13 78.6 51 64.7
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 2.3e-13 78.2 59 59.3
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.1e-13 77.8 56 58.9
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 3.1e-13 77.8 59 61.0
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 3.1e-13 77.8 51 66.7
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 4.0e-13 77.4 58 63.8
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.0e-13 77.4 60 58.3
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 4.0e-13 77.4 58 60.3
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 5.2e-13 77.0 58 58.6
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 6.8e-13 76.6 62 62.9
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 6.8e-13 76.6 52 65.4
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 6.8e-13 76.6 50 60.0
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 8.9e-13 76.3 56 58.9
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.9e-13 76.3 49 65.3
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 8.9e-13 76.3 49 65.3
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.5e-12 75.5 58 58.6
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 2.6e-12 74.7 56 55.4
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.6e-12 74.7 53 64.2
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 2.6e-12 74.7 50 60.0
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 7.5e-12 73.2 57 50.9
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 9.8e-12 72.8 53 56.6
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 2.9e-11 71.2 60 56.7
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 2.9e-11 71.2 57 50.9
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 3.7e-11 70.9 50 60.0
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 3.7e-11 70.9 57 57.9
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 4.9e-11 70.5 53 60.4
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 6.4e-11 70.1 53 58.5
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.1e-10 69.3 58 55.2
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.1e-10 69.3 51 58.8
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.4e-10 68.9 50 58.0
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.4e-10 68.2 53 54.7
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 5.4e-10 67.0 52 51.9
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 7.1e-10 66.6 55 52.7
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 7.1e-10 66.6 55 56.4
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 7.1e-10 66.6 52 55.8
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 9.2e-10 66.2 50 60.0
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 1.2e-09 65.9 58 50.0
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 1.2e-09 65.9 45 66.7
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 1.2e-09 65.9 45 66.7
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.6e-09 65.5 50 56.0
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 1.6e-09 65.5 43 72.1
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 1.6e-09 65.5 43 72.1
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.1e-09 65.1 55 50.9
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.7e-09 64.7 56 51.8
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 3.5e-09 64.3 59 50.8
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.6e-09 63.9 50 56.0
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 4.6e-09 63.9 58 48.3
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 4.6e-09 63.9 51 51.0
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 7.8e-09 63.2 52 53.8
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.3e-08 62.4 46 60.9
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 1.3e-08 62.4 55 52.7
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 1.7e-08 62.0 52 51.9
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.7e-08 62.0 50 52.0
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.7e-08 62.0 58 46.6
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 2.3e-08 61.6 46 54.3
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 2.3e-08 61.6 56 48.2
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 3.0e-08 61.2 48 52.1
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 3.0e-08 61.2 50 52.0
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.1e-08 60.5 43 55.8
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 5.1e-08 60.5 52 50.0
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 5.1e-08 60.5 55 52.7
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 6.6e-08 60.1 49 46.9
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 8.6e-08 59.7 48 50.0
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 8.6e-08 59.7 41 58.5
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 8.6e-08 59.7 41 63.4
PGSC0003DMG400004548 Solanum tuberosum HOM05D008200 ORTHO05D010849 8.6e-08 59.7 55 52.7
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 8.6e-08 59.7 49 49.0
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 1.1e-07 59.3 58 44.8
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 1.5e-07 58.9 45 55.6
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.5e-07 58.9 48 56.2
Solyc03g020060.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.5e-07 58.9 55 52.7
PGSC0003DMG400015289 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.5e-07 58.9 55 50.9
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 1.5e-07 58.9 53 47.2
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.9e-07 58.5 44 54.5
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.9e-07 58.5 38 63.2
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 2.5e-07 58.2 43 58.1
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 2.5e-07 58.2 47 55.3
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 2.5e-07 58.2 55 50.9
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 2.5e-07 58.2 55 52.7
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 2.5e-07 58.2 55 50.9
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 3.3e-07 57.8 38 63.2
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 3.3e-07 57.8 50 50.0
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 4.3e-07 57.4 52 50.0
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 4.3e-07 57.4 47 51.1
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 5.6e-07 57.0 48 54.2
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 5.6e-07 57.0 48 54.2
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 5.6e-07 57.0 48 54.2
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 7.3e-07 56.6 48 54.2
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 9.5e-07 56.2 48 54.2
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 9.5e-07 56.2 53 49.1
PGSC0003DMG400039762 Solanum tuberosum HOM05D008200 ORTHO05D010849 9.5e-07 56.2 56 50.0
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 1.2e-06 55.8 47 53.2
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 1.2e-06 55.8 48 52.1
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 1.2e-06 55.8 46 50.0
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 1.2e-06 55.8 47 51.1
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 1.2e-06 55.8 47 46.8
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 2.1e-06 55.1 43 60.5
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 2.1e-06 55.1 52 48.1
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 3.6e-06 54.3 53 43.4
CAN.G2197.1 Capsicum annuum HOM05D008200 ORTHO05D010849 4.7e-06 53.9 55 45.5
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 4.7e-06 53.9 55 43.6
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 6.2e-06 53.5 41 53.7
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 6.2e-06 53.5 53 50.9
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 6.2e-06 53.5 53 50.9
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 8.1e-06 53.1 53 50.9


User provided reference genes

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