Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G307.27 Capsicum annuum HOM05D000015 ORTHO05D026394 9.2e-54 213.4 114 100.0
CAN.G388.62 Capsicum annuum HOM05D000015 ORTHO05D002445 5.4e-14 81.3 91 56.0
PGSC0003DMG400021348 Solanum tuberosum HOM05D000015 ORTHO05D002445 1.2e-13 80.1 82 56.1
Peaxi162Scf00672g00612 Petunia axillaris HOM05D000015 ORTHO05D002445 1.0e-12 77.0 91 52.7
Solyc01g006660.3 Solanum lycopersicum HOM05D000015 ORTHO05D002445 3.9e-12 75.1 81 54.3
Nitab4.5_0000337g0020 Nicotiana tabacum HOM05D000015 ORTHO05D002445 6.7e-12 74.3 84 51.2
Nitab4.5_0010979g0020 Nicotiana tabacum HOM05D000015 ORTHO05D002445 6.7e-12 74.3 81 51.9
Sopen01g002650 Solanum pennellii HOM05D000015 ORTHO05D002445 1.1e-11 73.6 48 72.9
Nitab4.5_0000128g0270 Nicotiana tabacum HOM05D000015 ORTHO05D009488 1.5e-11 73.2 82 52.4
Peaxi162Scf00672g00611 Petunia axillaris HOM05D000015 ORTHO05D002445 2.8e-10 68.9 50 70.0
Peaxi162Scf00672g00078 Petunia axillaris HOM05D000015 ORTHO05D002445 3.6e-10 68.6 76 57.9
Nitab4.5_0008954g0040 Nicotiana tabacum HOM05D000015 ORTHO05D002445 4.8e-10 68.2 51 68.6
Peaxi162Scf00672g00515 Petunia axillaris HOM05D000015 ORTHO05D002445 4.8e-10 68.2 45 71.1
CAN.G388.60 Capsicum annuum HOM05D000015 ORTHO05D002445 8.1e-10 67.4 92 47.8
Sopen04g035440 Solanum pennellii HOM05D000015 ORTHO05D002445 8.1e-10 67.4 86 44.2
Nitab4.5_0001647g0120 Nicotiana tabacum HOM05D000015 ORTHO05D002445 1.1e-09 67.0 45 66.7
Nitab4.5_0010979g0030 Nicotiana tabacum HOM05D000015 ORTHO05D002445 1.1e-09 67.0 45 68.9
Solyc04g081810.4 Solanum lycopersicum HOM05D000015 ORTHO05D002445 1.8e-09 66.2 86 44.2
PGSC0003DMG400009947 Solanum tuberosum HOM05D000015 ORTHO05D002445 2.4e-09 65.9 86 44.2
Nitab4.5_0008247g0020 Nicotiana tabacum HOM05D000015 ORTHO05D002445 3.1e-09 65.5 45 71.1
CAN.G311.56 Capsicum annuum HOM05D000015 ORTHO05D002445 4.0e-09 65.1 45 66.7
Potri.005G243000 Populus trichocarpa HOM05D000015 ORTHO05D002445 9.0e-09 63.9 51 60.8
CiPaw.07G145500 Carya illinoinensis HOM05D000015 ORTHO05D002445 1.2e-08 63.5 43 67.4
Sabra05G0188300 Salix brachista HOM05D000015 ORTHO05D002445 1.2e-08 63.5 51 60.8
MSTRG.1167 Avicennia marina HOM05D000015 ORTHO05D002445 2.6e-08 62.4 45 62.2
QL02p012414 Quercus lobata HOM05D000015 ORTHO05D002445 2.6e-08 62.4 56 55.4
Sabra02G0014900 Salix brachista HOM05D000015 ORTHO05D002445 2.6e-08 62.4 51 60.8
Cc10_g01350 Coffea canephora HOM05D000015 ORTHO05D002445 3.4e-08 62.0 41 73.2
Prupe.1G361300 Prunus persica HOM05D000015 ORTHO05D002445 4.5e-08 61.6 45 64.4
AUR62013918 Chenopodium quinoa HOM05D000015 ORTHO05D002445 5.8e-08 61.2 45 64.4
Manes.18G012160 Manihot esculenta HOM05D000015 ORTHO05D002445 5.8e-08 61.2 52 59.6
EL10Ac1g02140 Beta vulgaris HOM05D000015 ORTHO05D002445 9.9e-08 60.5 55 54.5
Cfa013987 Carpinus fangiana HOM05D000015 ORTHO05D002445 9.9e-08 60.5 45 60.0
TPR.G7974 Trifolium pratense HOM05D000015 ORTHO05D002445 1.3e-07 60.1 62 50.0
Psat0s1401g0040 Pisum sativum HOM05D000015 ORTHO05D009789 1.7e-07 59.7 43 67.4
Psat0s1401g0080 Pisum sativum HOM05D000015 ORTHO05D002445 1.7e-07 59.7 43 67.4
Hund01683 Selenicereus undatus HOM05D000015 ORTHO05D026394 1.7e-07 59.7 48 56.2
TPR.G10827 Trifolium pratense HOM05D000015 ORTHO05D009789 2.2e-07 59.3 62 50.0
Haze_22675 Corylus avellana HOM05D000015 ORTHO05D002445 2.9e-07 58.9 45 57.8
Duzib093G2063 Durio zibethinus HOM05D000015 ORTHO05D002445 2.9e-07 58.9 45 62.2
Gorai.010G002000 Gossypium raimondii HOM05D000015 ORTHO05D002445 2.9e-07 58.9 45 66.7
MD08G1009400 Malus domestica HOM05D000015 ORTHO05D002445 2.9e-07 58.9 45 62.2
Medtr3g104930 Medicago truncatula HOM05D000015 ORTHO05D002445 2.9e-07 58.9 62 50.0
AUR62018273 Chenopodium quinoa HOM05D000015 ORTHO05D002445 3.8e-07 58.5 51 56.9
COL.COLO4_26110 Corchorus olitorius HOM05D000015 ORTHO05D002445 3.8e-07 58.5 50 64.0
Migut.C00884 Erythranthe guttata HOM05D000015 ORTHO05D002445 3.8e-07 58.5 45 60.0
Medtr3g114410 Medicago truncatula HOM05D000015 ORTHO05D002445 3.8e-07 58.5 43 62.8
TPR.G38186 Trifolium pratense HOM05D000015 ORTHO05D002445 3.8e-07 58.5 62 48.4
Actinidia17006 Actinidia chinensis HOM05D000015 ORTHO05D026394 4.9e-07 58.2 43 69.8
Gorai.009G192600 Gossypium raimondii HOM05D000015 ORTHO05D002445 6.4e-07 57.8 86 39.5
RcHm_v2.0_Chr6g0303461 Rosa chinensis HOM05D000015 ORTHO05D002445 6.4e-07 57.8 44 63.6
CANSAT25G3028 Cannabis sativa HOM05D000015 ORTHO05D002445 8.4e-07 57.4 41 63.4
Glyma.04G022500 Glycine max HOM05D000015 ORTHO05D002445 8.4e-07 57.4 45 60.0
Glyma.06G022600 Glycine max HOM05D000015 ORTHO05D002445 8.4e-07 57.4 45 62.2
Gohir.D05G187400 Gossypium hirsutum HOM05D000015 ORTHO05D002445 8.4e-07 57.4 45 60.0
HanXRQChr06g0185121 Helianthus annuus HOM05D000015 ORTHO05D002445 8.4e-07 57.4 49 55.1
GSVIVG01009968001 Vitis vinifera HOM05D000015 ORTHO05D002445 8.4e-07 57.4 45 60.0
MELO3C003737.2 Cucumis melo HOM05D000015 ORTHO05D002445 1.1e-06 57.0 40 62.5
Glyma.06G022500 Glycine max HOM05D000015 ORTHO05D002445 1.1e-06 57.0 45 62.2
Oeu013882.1 Olea europaea HOM05D000015 ORTHO05D002445 1.1e-06 57.0 83 44.6
VMungo1309G2629 Vigna mungo HOM05D000015 ORTHO05D002445 1.1e-06 57.0 45 62.2
PGR083G2729 Punica granatum HOM05D000015 ORTHO05D002445 1.4e-06 56.6 44 63.6
BcaB07g32029 Brassica carinata HOM05D000015 ORTHO05D002445 1.9e-06 56.2 47 53.2
CsaV3_3G046020 Cucumis sativus L. HOM05D000015 ORTHO05D002445 1.9e-06 56.2 40 62.5
Glyma.04G022300 Glycine max HOM05D000015 ORTHO05D002445 1.9e-06 56.2 62 48.4
Psat5g011280 Pisum sativum HOM05D000015 ORTHO05D002445 1.9e-06 56.2 41 65.9
Thecc.08G048700 Theobroma cacao HOM05D000015 ORTHO05D002445 1.9e-06 56.2 45 60.0
TAR628G1197 Trochodendron aralioides HOM05D000015 ORTHO05D002445 1.9e-06 56.2 41 61.0
AUR62018272 Chenopodium quinoa HOM05D000015 ORTHO05D002445 2.4e-06 55.8 45 55.6
Ciclev10000339m.g Citrus clementina HOM05D000015 ORTHO05D002445 2.4e-06 55.8 86 36.0
Eucgr.F01673 Eucalyptus grandis HOM05D000015 ORTHO05D002445 2.4e-06 55.8 45 60.0
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 2.4e-06 55.8 45 57.8
Atru.chr13.245 Acer truncatum HOM05D000015 ORTHO05D002445 3.2e-06 55.5 45 60.0
CARHR020670 Cardamine hirsuta HOM05D000015 ORTHO05D002445 3.2e-06 55.5 47 53.2
Phvul.009G018500 Phaseolus vulgaris HOM05D000015 ORTHO05D002445 3.2e-06 55.5 45 62.2
Sp1g17940 Schrenkiella parvula HOM05D000015 ORTHO05D002445 3.2e-06 55.5 47 53.2
Actinidia15448 Actinidia chinensis HOM05D000015 ORTHO05D002445 4.2e-06 55.1 44 63.6
Phvul.009G018600 Phaseolus vulgaris HOM05D000015 ORTHO05D002445 4.2e-06 55.1 62 48.4
Potri.002G018600 Populus trichocarpa HOM05D000015 ORTHO05D002445 4.2e-06 55.1 51 56.9
THA.LOC104811432 Tarenaya hassleriana HOM05D000015 ORTHO05D002445 4.2e-06 55.1 47 57.4
TAR376G0718 Trochodendron aralioides HOM05D000015 ORTHO05D002445 4.2e-06 55.1 45 62.2
AL1G33000 Arabidopsis lyrata HOM05D000015 ORTHO05D002445 5.5e-06 54.7 47 53.2
FvH4_2g38090 Fragaria vesca HOM05D000015 ORTHO05D002445 5.5e-06 54.7 44 63.6
FAN20G0064 Fragaria x ananassa HOM05D000015 ORTHO05D002445 5.5e-06 54.7 44 63.6
TWI56G0067 Tripterygium wilfordii HOM05D000015 ORTHO05D002445 5.5e-06 54.7 45 60.0
AT1G20160 Arabidopsis thaliana HOM05D000015 ORTHO05D002445 7.1e-06 54.3 47 53.2
Carub.0001s1970 Capsella rubella HOM05D000015 ORTHO05D002445 7.1e-06 54.3 47 48.9
ECA238G2257 Erigeron canadensis HOM05D000015 ORTHO05D002445 7.1e-06 54.3 78 39.7
Thhalv10006877m.g Eutrema salsugineum HOM05D000015 ORTHO05D002445 7.1e-06 54.3 47 53.2
SGA_v2.0_scaffold351G49664 Striga asiatica HOM05D000015 ORTHO05D002445 7.1e-06 54.3 43 55.8
BcaC05g25918 Brassica carinata HOM05D000015 ORTHO05D002445 9.3e-06 53.9 47 53.2
A06p16300 Brassica napus HOM05D000015 ORTHO05D002445 9.3e-06 53.9 47 53.2
C05p18680 Brassica napus HOM05D000015 ORTHO05D002445 9.3e-06 53.9 47 53.2
BolC5t30576H Brassica oleracea HOM05D000015 ORTHO05D002445 9.3e-06 53.9 47 53.2
BraA06t24732Z Brassica rapa HOM05D000015 ORTHO05D002445 9.3e-06 53.9 47 53.2
ClCG05G015540 Citrullus lanatus HOM05D000015 ORTHO05D002445 9.3e-06 53.9 40 62.5


User provided reference genes

Program Settings