Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 4.2e-56 221.1 108 100.0
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.5e-34 149.4 75 98.7
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 4.5e-34 147.9 75 97.3
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 4.5e-34 147.9 75 97.3
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.5e-29 132.1 75 89.3
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.1e-27 126.7 75 89.3
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.2e-18 96.7 70 68.6
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 3.4e-18 95.1 72 69.4
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 4.5e-18 94.7 70 68.6
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.9e-18 94.4 71 73.2
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.0e-17 93.6 71 64.8
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.7e-17 92.8 71 71.8
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 3.8e-17 91.7 71 69.0
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 8.5e-17 90.5 71 69.0
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.4e-16 89.7 72 66.7
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.4e-16 89.7 71 70.4
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 1.9e-16 89.4 71 66.2
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.9e-16 89.4 71 67.6
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.9e-16 89.4 71 67.6
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 1.9e-16 89.4 70 67.1
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.9e-16 89.4 71 64.8
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 2.5e-16 89.0 71 70.4
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 3.2e-16 88.6 71 62.0
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 4.2e-16 88.2 70 68.6
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 4.2e-16 88.2 71 63.4
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 5.5e-16 87.8 70 64.3
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 5.5e-16 87.8 71 69.0
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 5.5e-16 87.8 71 69.0
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 7.2e-16 87.4 71 60.6
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 7.2e-16 87.4 71 60.6
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 7.2e-16 87.4 71 60.6
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 7.2e-16 87.4 70 68.6
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 7.2e-16 87.4 80 65.0
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 7.2e-16 87.4 78 67.9
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 7.2e-16 87.4 71 63.4
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 9.4e-16 87.0 71 60.6
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 9.4e-16 87.0 71 67.6
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.2e-15 86.7 71 66.2
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 1.2e-15 86.7 71 67.6
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.2e-15 86.7 74 64.9
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.2e-15 86.7 74 60.8
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 1.6e-15 86.3 71 64.8
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.6e-15 86.3 70 65.7
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-15 86.3 70 68.6
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.6e-15 86.3 72 61.1
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-15 85.9 72 62.5
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-15 85.9 71 59.2
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 2.1e-15 85.9 71 59.2
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-15 85.9 71 59.2
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-15 85.9 71 59.2
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 2.1e-15 85.9 71 59.2
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 2.1e-15 85.9 71 67.6
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.7e-15 85.5 72 61.1
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.7e-15 85.5 71 59.2
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 3.6e-15 85.1 71 66.2
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 3.6e-15 85.1 70 68.6
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 4.7e-15 84.7 71 59.2
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.7e-15 84.7 74 66.2
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 4.7e-15 84.7 74 63.5
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 4.7e-15 84.7 71 63.4
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 6.1e-15 84.3 74 59.5
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 6.1e-15 84.3 71 63.4
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 8.0e-15 84.0 71 59.2
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 8.0e-15 84.0 75 58.7
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 8.0e-15 84.0 71 59.2
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 8.0e-15 84.0 71 59.2
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 8.0e-15 84.0 71 59.2
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 8.0e-15 84.0 71 59.2
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 8.0e-15 84.0 75 61.3
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 8.0e-15 84.0 70 64.3
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 8.0e-15 84.0 70 64.3
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.0e-15 84.0 79 63.3
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 8.0e-15 84.0 74 62.2
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 8.0e-15 84.0 71 60.6
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-14 83.6 75 58.7
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-14 83.6 75 58.7
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 1.0e-14 83.6 73 64.4
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.0e-14 83.6 71 63.4
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.4e-14 83.2 71 59.2
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.8e-14 82.8 74 58.1
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.8e-14 82.8 75 58.7
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.8e-14 82.8 71 63.4
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.3e-14 82.4 72 63.9
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.3e-14 82.4 71 67.6
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.3e-14 82.4 75 58.7
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 2.3e-14 82.4 72 59.7
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 3.0e-14 82.0 68 61.8
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 3.0e-14 82.0 75 57.3
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 3.0e-14 82.0 75 57.3
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 3.0e-14 82.0 71 57.7
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 3.9e-14 81.6 71 64.8
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 3.9e-14 81.6 71 62.0
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 3.9e-14 81.6 71 62.0
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 5.2e-14 81.3 78 55.1
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 5.2e-14 81.3 72 63.9
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 6.7e-14 80.9 74 59.5
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 6.7e-14 80.9 75 57.3
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 6.7e-14 80.9 70 64.3
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 6.7e-14 80.9 70 65.7
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 8.8e-14 80.5 71 59.2
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 8.8e-14 80.5 75 57.3
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 8.8e-14 80.5 76 56.6
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 8.8e-14 80.5 75 57.3
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 8.8e-14 80.5 75 57.3
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 8.8e-14 80.5 75 57.3
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 8.8e-14 80.5 75 57.3
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 8.8e-14 80.5 75 57.3
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 8.8e-14 80.5 70 65.7
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 2.0e-13 79.3 76 56.6
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 2.0e-13 79.3 76 56.6
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 2.0e-13 79.3 74 58.1
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 2.0e-13 79.3 78 60.3
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 2.0e-13 79.3 69 60.9
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 2.6e-13 79.0 76 56.6
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 2.6e-13 79.0 71 64.8
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 2.6e-13 79.0 69 58.0
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 4.4e-13 78.2 74 55.4
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.4e-13 78.2 69 65.2
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 4.4e-13 78.2 71 62.0
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 4.4e-13 78.2 70 60.0
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 7.4e-13 77.4 81 55.6
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 7.4e-13 77.4 71 63.4
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 7.4e-13 77.4 71 63.4
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 7.4e-13 77.4 71 63.4
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 7.4e-13 77.4 70 55.7
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 9.7e-13 77.0 70 62.9
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.3e-12 76.6 71 63.4
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.7e-12 76.3 71 60.6
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.7e-12 76.3 71 56.3
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 1.7e-12 76.3 71 62.0
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 2.2e-12 75.9 71 59.2
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.8e-12 75.5 70 61.4
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 4.8e-12 74.7 68 60.3
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 5.3e-11 71.2 70 55.7
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 5.3e-11 71.2 77 53.2
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 7.0e-11 70.9 70 51.4
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 9.1e-11 70.5 70 54.3
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 1.6e-10 69.7 75 52.0
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.6e-10 69.7 72 50.0
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 1.7e-09 66.2 77 49.4
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.9e-09 65.5 67 50.7
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 6.5e-09 64.3 78 47.4
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 8.5e-09 63.9 82 46.3
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.5e-08 63.2 60 60.0
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 3.2e-08 62.0 78 46.2
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 9.4e-08 60.5 66 48.5
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 9.4e-08 60.5 80 48.8


User provided reference genes

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