Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G303.69 Capsicum annuum HOM05D003146 ORTHO05D001819 6.5e-54 213.8 106 100.0
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 1.8e-32 142.5 87 81.6
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 4.1e-32 141.4 88 79.5
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 4.1e-32 141.4 87 78.2
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 1.2e-31 139.8 87 79.3
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 1.6e-31 139.4 87 82.8
PGSC0003DMG400018189 Solanum tuberosum HOM05D003146 ORTHO05D001819 1.6e-31 139.4 87 77.0
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 2.7e-31 138.7 87 79.3
CAN.G338.40 Capsicum annuum HOM05D003146 ORTHO05D001819 3.3e-29 131.7 87 74.7
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 2.1e-28 129.0 87 74.7
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 4.9e-25 117.9 91 68.1
PGSC0003DMG400040362 Solanum tuberosum HOM05D003146 ORTHO05D001819 1.3e-22 109.8 87 64.4
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 1.1e-21 106.7 94 60.6
CAN.G338.43 Capsicum annuum HOM05D003146 ORTHO05D001819 1.2e-20 103.2 89 58.4
Peaxi162Scf00126g00017 Petunia axillaris HOM05D003146 ORTHO05D001819 2.1e-20 102.4 88 60.2
Nitab4.5_0005440g0020 Nicotiana tabacum HOM05D003146 ORTHO05D001819 2.8e-20 102.1 87 60.9
Nitab4.5_0000035g0080 Nicotiana tabacum HOM05D003146 ORTHO05D001819 6.2e-20 100.9 87 59.8
Solyc03g112170.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 6.2e-20 100.9 89 56.2
Sopen03g031260 Solanum pennellii HOM05D003146 ORTHO05D001819 1.8e-19 99.4 89 55.1
Peaxi162Scf00126g10015 Petunia axillaris HOM05D003146 ORTHO05D001819 6.8e-19 97.4 86 58.1
PGSC0003DMG400040957 Solanum tuberosum HOM05D014661 ORTHO05D001819 2.6e-18 95.5 89 53.9
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 2.9e-17 92.0 87 54.0
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 4.9e-17 91.3 88 54.5
Hma1.2p1_3273F.1_g334810 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 1.1e-16 90.1 85 55.3
Hma1.2p1_3469F.1_g336200 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 1.1e-16 90.1 85 55.3
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 9.2e-16 87.0 83 51.8
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 1.1e-13 80.1 82 50.0
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.1e-11 73.6 88 43.2
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 1.8e-11 72.8 86 43.0
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.0e-10 69.3 89 43.8
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 2.6e-10 68.9 83 47.0
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 2.6e-10 68.9 88 43.2
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.8e-10 67.8 91 42.9
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.8e-10 67.8 91 42.9
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.6e-10 67.4 91 42.9
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 7.6e-10 67.4 104 37.5
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.9e-10 67.0 89 43.8
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.9e-10 67.0 91 41.8
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 1.3e-09 66.6 88 39.8
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-09 66.6 91 41.8
CsaV3_UNG044260 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.3e-09 66.6 88 42.0
CsaV3_UNG083670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.3e-09 66.6 88 42.0
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.3e-09 66.6 88 42.0
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.3e-09 66.6 88 42.0
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.3e-09 66.6 88 42.0
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 1.7e-09 66.2 88 39.8
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 1.7e-09 66.2 89 41.6
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-09 65.9 91 41.8
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-09 65.9 89 41.6
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-09 65.9 89 41.6
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-09 65.5 89 41.6
MELO3C034826.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-09 65.5 89 42.7
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.8e-09 65.1 91 41.8
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 4.9e-09 64.7 88 38.6
MELO3C027828.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.9e-09 64.7 89 40.4
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.9e-09 64.7 91 41.8
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.9e-09 64.7 91 40.7
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.9e-09 64.7 91 42.9
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.4e-09 64.3 89 42.7
DCAR_030435 Daucus carota HOM05D003146 ORTHO05D001819 6.4e-09 64.3 86 40.7
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.4e-09 63.9 89 40.4
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.4e-09 63.9 91 42.9
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 8.4e-09 63.9 88 35.2
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 8.4e-09 63.9 87 39.1
Actinidia28299 Actinidia chinensis HOM05D003146 ORTHO05D001819 1.1e-08 63.5 79 43.0
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-08 63.5 89 42.7
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 1.9e-08 62.8 91 40.7
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 1.9e-08 62.8 91 40.7
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 1.9e-08 62.8 91 40.7
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 1.9e-08 62.8 91 40.7
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-08 62.8 89 40.4
Rhsim04G0244300 Rhododendron simsii HOM05D003146 ORTHO05D001819 1.9e-08 62.8 85 42.4
PGR004G1752 Punica granatum HOM05D003146 ORTHO05D001819 2.4e-08 62.4 91 40.7
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 3.2e-08 62.0 103 36.9
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.2e-08 62.0 89 40.4
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.2e-08 62.0 89 40.4
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 4.1e-08 61.6 91 39.6
A01p37050 Brassica napus HOM05D003146 ORTHO05D001819 5.4e-08 61.2 91 39.6
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 5.4e-08 61.2 88 39.8
BraA01t03766Z Brassica rapa HOM05D003146 ORTHO05D001819 7.1e-08 60.8 91 39.6
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 7.1e-08 60.8 92 40.2
MELO3C030077.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.1e-08 60.8 91 40.7
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 1.2e-07 60.1 88 38.6
Nn1g00654 Nelumbo nucifera HOM05D001445 ORTHO05D001261 1.2e-07 60.1 88 39.8
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.6e-07 59.7 89 39.3
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.6e-07 59.7 84 38.1
Rhsim04G0244200 Rhododendron simsii HOM05D003146 ORTHO05D001819 2.7e-07 58.9 86 41.9
MELO3C028207.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.6e-07 58.2 85 38.8
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.6e-07 58.2 81 38.3
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.6e-07 58.2 81 38.3
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.6e-07 58.2 81 38.3
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.6e-07 58.2 81 38.3
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.6e-07 58.2 81 38.3
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.6e-07 58.2 81 38.3
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.6e-07 58.2 81 38.3
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.6e-07 58.2 81 38.3
MD16G1147400 Malus domestica HOM05D003146 ORTHO05D001819 6.0e-07 57.8 86 38.4
THA.LOC104816708 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 7.8e-07 57.4 88 36.4
THA.LOC104825373 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 7.8e-07 57.4 88 36.4
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 1.0e-06 57.0 88 38.6
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.0e-06 57.0 88 37.5
QL06p013377 Quercus lobata HOM05D003146 ORTHO05D001819 1.3e-06 56.6 88 34.1
THA.LOC104817105 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.7e-06 56.2 88 36.4
MELO3C032509.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.3e-06 55.8 89 39.3
MELO3C027044.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.0e-06 55.5 89 39.3
MELO3C034867.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.0e-06 55.5 89 39.3
MELO3C028053.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.9e-06 55.1 70 40.0
DCAR_030436 Daucus carota HOM05D003146 ORTHO05D001819 3.9e-06 55.1 84 36.9
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 5.1e-06 54.7 93 33.3
CARHR174490 Cardamine hirsuta HOM05D001445 ORTHO05D001261 8.6e-06 53.9 53 43.4


User provided reference genes

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