Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.4e-45 186.0 105 100.0
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 7.4e-34 147.1 102 82.4
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.7e-33 146.0 102 81.4
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 4.1e-32 141.4 99 82.8
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 5.9e-31 137.5 99 77.8
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.7e-31 137.1 99 79.8
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 7.7e-31 137.1 102 78.4
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 4.0e-27 124.8 101 73.3
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.6e-26 122.1 99 74.7
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.3e-26 121.7 99 73.7
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.3e-25 119.8 89 77.5
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.2e-25 119.0 99 71.7
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.8e-25 118.6 92 76.1
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.8e-25 117.9 99 72.7
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.3e-25 117.5 101 71.3
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 1.4e-24 116.3 92 75.0
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 5.3e-24 114.4 91 73.6
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-23 113.2 93 69.9
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 4.5e-23 111.3 96 67.7
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.7e-22 109.4 91 67.0
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 2.2e-22 109.0 93 68.8
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.8e-22 108.2 102 64.7
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.8e-22 108.2 102 64.7
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.8e-22 108.2 95 66.3
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 5.0e-22 107.8 90 70.0
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.0e-22 107.8 83 73.5
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 8.5e-22 107.1 87 71.3
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.5e-21 105.5 88 71.6
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 3.2e-21 105.1 93 68.8
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 4.2e-21 104.8 102 62.7
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.2e-21 104.8 96 63.5
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 4.2e-21 104.8 81 75.3
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 9.4e-21 103.6 78 76.9
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 9.4e-21 103.6 95 63.2
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.2e-20 103.2 95 64.2
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 2.1e-20 102.4 93 64.5
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 6.1e-20 100.9 90 66.7
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 8.0e-20 100.5 95 68.4
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.0e-19 100.1 92 64.1
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.8e-19 99.4 90 62.2
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 2.3e-19 99.0 90 64.4
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.0e-19 98.6 91 65.9
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.0e-19 98.6 101 59.4
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 3.0e-19 98.6 90 64.4
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 5.2e-19 97.8 88 65.9
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 5.2e-19 97.8 88 65.9
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 6.8e-19 97.4 87 64.4
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 8.8e-19 97.1 70 75.7
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.5e-18 96.3 97 66.0
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 2.0e-18 95.9 86 66.3
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.4e-18 95.1 83 68.7
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.4e-18 95.1 83 68.7
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 3.4e-18 95.1 83 66.3
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 4.4e-18 94.7 96 58.3
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 7.5e-18 94.0 82 67.1
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 7.5e-18 94.0 93 62.4
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 7.5e-18 94.0 99 57.6
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 9.8e-18 93.6 102 59.8
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.3e-17 93.2 84 67.9
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.7e-17 92.8 86 62.8
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.8e-17 92.0 91 62.6
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 3.7e-17 91.7 91 61.5
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 4.8e-17 91.3 80 70.0
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 4.8e-17 91.3 89 67.4
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 4.8e-17 91.3 85 62.4
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 6.3e-17 90.9 70 71.4
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 6.3e-17 90.9 99 58.6
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 6.3e-17 90.9 83 67.5
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 8.3e-17 90.5 88 64.8
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.1e-16 90.1 87 64.4
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 1.1e-16 90.1 99 59.6
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.4e-16 89.7 95 56.8
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.4e-16 89.7 84 61.9
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.8e-16 89.4 80 65.0
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 2.4e-16 89.0 102 57.8
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 4.1e-16 88.2 95 53.7
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 5.4e-16 87.8 92 57.6
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 5.4e-16 87.8 84 65.5
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 7.0e-16 87.4 95 60.0
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 9.1e-16 87.0 93 61.3
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 9.1e-16 87.0 84 59.5
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.6e-15 86.3 77 66.2
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 2.0e-15 85.9 84 57.1
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 2.7e-15 85.5 79 67.1
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 5.9e-15 84.3 60 76.7
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 5.9e-15 84.3 97 55.7
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 5.9e-15 84.3 80 65.0
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 7.7e-15 84.0 77 61.0
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 7.7e-15 84.0 102 58.8
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.0e-14 83.6 98 59.2
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 1.0e-14 83.6 85 60.0
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 1.3e-14 83.2 92 54.3
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.3e-14 83.2 97 53.6
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.3e-14 83.2 96 53.1
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 1.7e-14 82.8 83 61.4
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.2e-14 82.4 99 56.6
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.2e-14 82.4 99 56.6
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 2.2e-14 82.4 89 51.7
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 2.9e-14 82.0 89 58.4
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 2.9e-14 82.0 105 51.4
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 2.9e-14 82.0 87 60.9
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.8e-14 81.6 88 53.4
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 3.8e-14 81.6 83 61.4
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 5.0e-14 81.3 86 57.0
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 6.5e-14 80.9 79 63.3
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 8.5e-14 80.5 73 65.8
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 8.5e-14 80.5 91 56.0
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.5e-13 79.7 81 56.8
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 3.2e-13 78.6 93 55.9
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.2e-13 78.6 75 65.3
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 7.2e-13 77.4 99 56.6
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.2e-13 77.4 84 61.9
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 7.2e-13 77.4 92 55.4
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.2e-12 76.6 75 62.7
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.6e-12 76.3 70 58.6
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.7e-12 74.7 81 59.3
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 8.0e-12 73.9 90 50.0
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.0e-11 73.6 99 52.5
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.4e-11 73.2 54 75.9
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.4e-11 73.2 75 61.3
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.4e-11 73.2 84 59.5
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.4e-11 73.2 81 58.0
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.4e-11 73.2 84 59.5
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 3.0e-11 72.0 86 50.0
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 4.0e-11 71.6 84 57.1
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 5.2e-11 71.2 83 55.4
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.2e-10 70.1 93 51.6
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 1.2e-10 70.1 88 46.6
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.0e-10 69.3 85 51.8
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 2.0e-10 69.3 97 53.6
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 4.4e-10 68.2 83 54.2
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 5.7e-10 67.8 57 66.7
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.3e-09 66.6 67 61.2
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-09 65.9 93 48.4
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 2.2e-09 65.9 93 48.4
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 2.8e-09 65.5 93 48.4
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 4.9e-09 64.7 93 48.4
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 4.9e-09 64.7 57 66.7
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 8.3e-09 63.9 78 55.1
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.1e-08 63.5 93 48.4
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.4e-08 63.2 83 50.6
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.8e-08 62.8 93 48.4
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.8e-08 62.8 87 51.7
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.8e-08 62.8 87 50.6
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.8e-08 62.8 77 54.5
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 2.4e-08 62.4 93 49.5
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.4e-08 62.4 102 44.1
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 2.4e-08 62.4 86 47.7
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 3.1e-08 62.0 83 50.6
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 4.1e-08 61.6 77 50.6
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 4.1e-08 61.6 77 53.2
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 4.1e-08 61.6 77 53.2
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.1e-08 61.6 77 53.2
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 5.4e-08 61.2 77 53.2
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 5.4e-08 61.2 77 53.2
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 5.4e-08 61.2 77 53.2
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 5.4e-08 61.2 77 51.9
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 7.0e-08 60.8 87 49.4
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 1.2e-07 60.1 77 51.9
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.2e-07 60.1 101 43.6
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.6e-07 59.7 77 51.9
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-07 59.3 87 47.1
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 2.0e-07 59.3 87 47.1
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 2.0e-07 59.3 87 47.1
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 2.0e-07 59.3 87 47.1
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.0e-07 59.3 93 46.2
MBI12_g23072_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.0e-07 59.3 89 46.1
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 2.0e-07 59.3 84 45.2
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 2.0e-07 59.3 83 49.4
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 2.0e-07 59.3 74 52.7
MBI12_g23073_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.7e-07 58.9 95 44.2
MBI12_g33141_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.7e-07 58.9 95 44.2
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 3.5e-07 58.5 77 51.9
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 3.5e-07 58.5 89 48.3
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 3.5e-07 58.5 94 43.6
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 7.7e-07 57.4 77 49.4
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 7.7e-07 57.4 82 47.6
MBI04_g21753_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 7.7e-07 57.4 52 65.4
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.0e-06 57.0 82 47.6
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.0e-06 57.0 82 47.6
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.3e-06 56.6 83 47.0
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.7e-06 56.2 77 50.6
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.8e-06 55.1 86 48.8
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 3.8e-06 55.1 88 44.3
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 6.6e-06 54.3 70 50.0
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 6.6e-06 54.3 82 45.1


User provided reference genes

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